miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15857 3' -54.7 NC_004065.1 + 109196 0.66 0.98252
Target:  5'- -gGCCGGcGGCGGCGcCUCGgccucuuccUGCUCGg -3'
miRNA:   3'- cgCGGCUcCUGUCGUaGAGC---------AUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 179440 0.66 0.98252
Target:  5'- gGCGcCCGAaGACAGUAgg--GUGCUCGa -3'
miRNA:   3'- -CGC-GGCUcCUGUCGUagagCAUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 183506 0.66 0.980524
Target:  5'- gGUGCaCGAccGACAGgGUCUCGaacgGCUCGc -3'
miRNA:   3'- -CGCG-GCUc-CUGUCgUAGAGCa---UGAGC- -5'
15857 3' -54.7 NC_004065.1 + 32790 0.66 0.980524
Target:  5'- uGCGCuCGAGGGC-----CUCGUugUCGu -3'
miRNA:   3'- -CGCG-GCUCCUGucguaGAGCAugAGC- -5'
15857 3' -54.7 NC_004065.1 + 24922 0.66 0.980524
Target:  5'- gGCGCCauaucGAGcgaucGACAGCGUUUuCGaGCUCGa -3'
miRNA:   3'- -CGCGG-----CUC-----CUGUCGUAGA-GCaUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 86364 0.66 0.980315
Target:  5'- -aGCCGAGGcucuCGGCcacgucgggguagGUCUCGgcCUCa -3'
miRNA:   3'- cgCGGCUCCu---GUCG-------------UAGAGCauGAGc -5'
15857 3' -54.7 NC_004065.1 + 165745 0.66 0.979679
Target:  5'- cGCGCCGcGccuuccaggaacucGGACAGCGUCU-GUagcacccGCUCGu -3'
miRNA:   3'- -CGCGGC-U--------------CCUGUCGUAGAgCA-------UGAGC- -5'
15857 3' -54.7 NC_004065.1 + 197120 0.66 0.979247
Target:  5'- uCGUCGccuccgacccccgacAGGACGGCAUCUCGgACg-- -3'
miRNA:   3'- cGCGGC---------------UCCUGUCGUAGAGCaUGagc -5'
15857 3' -54.7 NC_004065.1 + 19350 0.66 0.978362
Target:  5'- uCGCgGAGGucucucgggaGGCGUCUCGgucucgcGCUCGg -3'
miRNA:   3'- cGCGgCUCCug--------UCGUAGAGCa------UGAGC- -5'
15857 3' -54.7 NC_004065.1 + 81374 0.66 0.978362
Target:  5'- cGCGCaCGAGcACGGCGUCcugcaggcaGUACUUGc -3'
miRNA:   3'- -CGCG-GCUCcUGUCGUAGag-------CAUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 141206 0.66 0.976028
Target:  5'- cGCGCCGAcGACAgGCAgaUCgcgCGUGCg-- -3'
miRNA:   3'- -CGCGGCUcCUGU-CGU--AGa--GCAUGagc -5'
15857 3' -54.7 NC_004065.1 + 151529 0.66 0.976028
Target:  5'- cGCuGCCGGccGGGCGGUGUCgggCGcGCUUGa -3'
miRNA:   3'- -CG-CGGCU--CCUGUCGUAGa--GCaUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 121630 0.66 0.976028
Target:  5'- uGCccCCGAGGAUGGCGUUgagcgcgucgUCGUcCUCGa -3'
miRNA:   3'- -CGc-GGCUCCUGUCGUAG----------AGCAuGAGC- -5'
15857 3' -54.7 NC_004065.1 + 168726 0.66 0.976028
Target:  5'- -gGUCGAcGGgGGCGUCUCGUACa-- -3'
miRNA:   3'- cgCGGCUcCUgUCGUAGAGCAUGagc -5'
15857 3' -54.7 NC_004065.1 + 223136 0.66 0.976028
Target:  5'- cGCGUagaUGAGGGCgAGCAUCcCGgcCUUGa -3'
miRNA:   3'- -CGCG---GCUCCUG-UCGUAGaGCauGAGC- -5'
15857 3' -54.7 NC_004065.1 + 138154 0.66 0.975785
Target:  5'- cCGCCGGGGGCuucacguauauaaAGguUCUgGUGCcgCGg -3'
miRNA:   3'- cGCGGCUCCUG-------------UCguAGAgCAUGa-GC- -5'
15857 3' -54.7 NC_004065.1 + 92016 0.66 0.973514
Target:  5'- uGCGCCgcaaucgcaGAGGACcGCGggcUCUUGgcgcGCUCGa -3'
miRNA:   3'- -CGCGG---------CUCCUGuCGU---AGAGCa---UGAGC- -5'
15857 3' -54.7 NC_004065.1 + 180966 0.66 0.973514
Target:  5'- uUGCCGGucagcuggccGGACGGgGUUUCGguccgGCUCGu -3'
miRNA:   3'- cGCGGCU----------CCUGUCgUAGAGCa----UGAGC- -5'
15857 3' -54.7 NC_004065.1 + 174609 0.67 0.970815
Target:  5'- cGCGCCccGGACAGCccaucaggccgGUCUucUGUccGCUCGg -3'
miRNA:   3'- -CGCGGcuCCUGUCG-----------UAGA--GCA--UGAGC- -5'
15857 3' -54.7 NC_004065.1 + 91127 0.67 0.970815
Target:  5'- uCGCUGAGcGCGGgGUCguagaaccCGUGCUCGa -3'
miRNA:   3'- cGCGGCUCcUGUCgUAGa-------GCAUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.