Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15857 | 3' | -54.7 | NC_004065.1 | + | 138154 | 0.66 | 0.975785 |
Target: 5'- cCGCCGGGGGCuucacguauauaaAGguUCUgGUGCcgCGg -3' miRNA: 3'- cGCGGCUCCUG-------------UCguAGAgCAUGa-GC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 24922 | 0.66 | 0.980524 |
Target: 5'- gGCGCCauaucGAGcgaucGACAGCGUUUuCGaGCUCGa -3' miRNA: 3'- -CGCGG-----CUC-----CUGUCGUAGA-GCaUGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 32790 | 0.66 | 0.980524 |
Target: 5'- uGCGCuCGAGGGC-----CUCGUugUCGu -3' miRNA: 3'- -CGCG-GCUCCUGucguaGAGCAugAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 109196 | 0.66 | 0.98252 |
Target: 5'- -gGCCGGcGGCGGCGcCUCGgccucuuccUGCUCGg -3' miRNA: 3'- cgCGGCUcCUGUCGUaGAGC---------AUGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 197120 | 0.66 | 0.979247 |
Target: 5'- uCGUCGccuccgacccccgacAGGACGGCAUCUCGgACg-- -3' miRNA: 3'- cGCGGC---------------UCCUGUCGUAGAGCaUGagc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 121630 | 0.66 | 0.976028 |
Target: 5'- uGCccCCGAGGAUGGCGUUgagcgcgucgUCGUcCUCGa -3' miRNA: 3'- -CGc-GGCUCCUGUCGUAG----------AGCAuGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 179440 | 0.66 | 0.98252 |
Target: 5'- gGCGcCCGAaGACAGUAgg--GUGCUCGa -3' miRNA: 3'- -CGC-GGCUcCUGUCGUagagCAUGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 151529 | 0.66 | 0.976028 |
Target: 5'- cGCuGCCGGccGGGCGGUGUCgggCGcGCUUGa -3' miRNA: 3'- -CG-CGGCU--CCUGUCGUAGa--GCaUGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 180966 | 0.66 | 0.973514 |
Target: 5'- uUGCCGGucagcuggccGGACGGgGUUUCGguccgGCUCGu -3' miRNA: 3'- cGCGGCU----------CCUGUCgUAGAGCa----UGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 86364 | 0.66 | 0.980315 |
Target: 5'- -aGCCGAGGcucuCGGCcacgucgggguagGUCUCGgcCUCa -3' miRNA: 3'- cgCGGCUCCu---GUCG-------------UAGAGCauGAGc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 81374 | 0.66 | 0.978362 |
Target: 5'- cGCGCaCGAGcACGGCGUCcugcaggcaGUACUUGc -3' miRNA: 3'- -CGCG-GCUCcUGUCGUAGag-------CAUGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 19350 | 0.66 | 0.978362 |
Target: 5'- uCGCgGAGGucucucgggaGGCGUCUCGgucucgcGCUCGg -3' miRNA: 3'- cGCGgCUCCug--------UCGUAGAGCa------UGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 165745 | 0.66 | 0.979679 |
Target: 5'- cGCGCCGcGccuuccaggaacucGGACAGCGUCU-GUagcacccGCUCGu -3' miRNA: 3'- -CGCGGC-U--------------CCUGUCGUAGAgCA-------UGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 168726 | 0.66 | 0.976028 |
Target: 5'- -gGUCGAcGGgGGCGUCUCGUACa-- -3' miRNA: 3'- cgCGGCUcCUgUCGUAGAGCAUGagc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 183506 | 0.66 | 0.980524 |
Target: 5'- gGUGCaCGAccGACAGgGUCUCGaacgGCUCGc -3' miRNA: 3'- -CGCG-GCUc-CUGUCgUAGAGCa---UGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 92016 | 0.66 | 0.973514 |
Target: 5'- uGCGCCgcaaucgcaGAGGACcGCGggcUCUUGgcgcGCUCGa -3' miRNA: 3'- -CGCGG---------CUCCUGuCGU---AGAGCa---UGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 223136 | 0.66 | 0.976028 |
Target: 5'- cGCGUagaUGAGGGCgAGCAUCcCGgcCUUGa -3' miRNA: 3'- -CGCG---GCUCCUG-UCGUAGaGCauGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 141206 | 0.66 | 0.976028 |
Target: 5'- cGCGCCGAcGACAgGCAgaUCgcgCGUGCg-- -3' miRNA: 3'- -CGCGGCUcCUGU-CGU--AGa--GCAUGagc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 91127 | 0.67 | 0.970815 |
Target: 5'- uCGCUGAGcGCGGgGUCguagaaccCGUGCUCGa -3' miRNA: 3'- cGCGGCUCcUGUCgUAGa-------GCAUGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 200342 | 0.67 | 0.964837 |
Target: 5'- gGCGCCGAGGcuCAGCAaccugC-CGgACUCu -3' miRNA: 3'- -CGCGGCUCCu-GUCGUa----GaGCaUGAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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