Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15857 | 3' | -54.7 | NC_004065.1 | + | 177503 | 0.67 | 0.964836 |
Target: 5'- cCGCCGGGGGuCAGUAUCcCuUGcCUCGg -3' miRNA: 3'- cGCGGCUCCU-GUCGUAGaGcAU-GAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 114889 | 0.67 | 0.964836 |
Target: 5'- gGCGguuCCGAGGcCAuCAUCUCGgugGCUCc -3' miRNA: 3'- -CGC---GGCUCCuGUcGUAGAGCa--UGAGc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 174609 | 0.67 | 0.970815 |
Target: 5'- cGCGCCccGGACAGCccaucaggccgGUCUucUGUccGCUCGg -3' miRNA: 3'- -CGCGGcuCCUGUCG-----------UAGA--GCA--UGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 75886 | 0.67 | 0.970815 |
Target: 5'- cGCGCagGAGGGCcuGGUA-CUCGgcCUCGu -3' miRNA: 3'- -CGCGg-CUCCUG--UCGUaGAGCauGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 132460 | 0.67 | 0.969969 |
Target: 5'- gGCGCCGAGGuCAGCuUCgUCaggaagcaggugcuGUcGCUCGu -3' miRNA: 3'- -CGCGGCUCCuGUCGuAG-AG--------------CA-UGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 191465 | 0.67 | 0.966714 |
Target: 5'- aCGCCGAGGugcggcaccaccacGCAcGCGuguccccccagguUCUCGUGcCUCGg -3' miRNA: 3'- cGCGGCUCC--------------UGU-CGU-------------AGAGCAU-GAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 78153 | 0.67 | 0.964836 |
Target: 5'- -gGUCGAGG-CAGCG-CUUGUugUUGa -3' miRNA: 3'- cgCGGCUCCuGUCGUaGAGCAugAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 124483 | 0.67 | 0.960518 |
Target: 5'- uGCGCCGGguccagggccgcgcGGAucucCAGCAUCUgcgCGUuCUCGg -3' miRNA: 3'- -CGCGGCU--------------CCU----GUCGUAGA---GCAuGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 45998 | 0.67 | 0.961546 |
Target: 5'- gGCGCCGuGG-CGGCGUUga--ACUCGg -3' miRNA: 3'- -CGCGGCuCCuGUCGUAGagcaUGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 200342 | 0.67 | 0.964837 |
Target: 5'- gGCGCCGAGGcuCAGCAaccugC-CGgACUCu -3' miRNA: 3'- -CGCGGCUCCu-GUCGUa----GaGCaUGAGc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 130597 | 0.68 | 0.941899 |
Target: 5'- aUGUCGAGG-CGGCGUCUgccGCUCGg -3' miRNA: 3'- cGCGGCUCCuGUCGUAGAgcaUGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 144078 | 0.68 | 0.941899 |
Target: 5'- cGCGUCGAGGACGGCGaugagaUCGgcgACg-- -3' miRNA: 3'- -CGCGGCUCCUGUCGUag----AGCa--UGagc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 13100 | 0.68 | 0.946265 |
Target: 5'- cGCGuCCGAGGACgaagucuuggAGCAUCUUcuuCUCu -3' miRNA: 3'- -CGC-GGCUCCUG----------UCGUAGAGcauGAGc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 179739 | 0.68 | 0.954337 |
Target: 5'- uCGCCGcgcGGACGGCGgUCUCGggGCcCGa -3' miRNA: 3'- cGCGGCu--CCUGUCGU-AGAGCa-UGaGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 186553 | 0.68 | 0.941899 |
Target: 5'- gGCGCCGAGGACA------CGUGCUgCGg -3' miRNA: 3'- -CGCGGCUCCUGUcguagaGCAUGA-GC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 43795 | 0.68 | 0.946265 |
Target: 5'- -gGCCaGGGGCAGCAUCgcuccaUCGUGgUCc -3' miRNA: 3'- cgCGGcUCCUGUCGUAG------AGCAUgAGc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 167646 | 0.68 | 0.932492 |
Target: 5'- uCGUCGgcGGGACGGCcgUacCGUGCUCGg -3' miRNA: 3'- cGCGGC--UCCUGUCGuaGa-GCAUGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 76521 | 0.68 | 0.946266 |
Target: 5'- uCGuuGAGGACGGCGg--CGUGUUCGc -3' miRNA: 3'- cGCggCUCCUGUCGUagaGCAUGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 27701 | 0.68 | 0.954337 |
Target: 5'- uGCGUa-GGGAUcgGGCGUCUggccCGUGCUCGc -3' miRNA: 3'- -CGCGgcUCCUG--UCGUAGA----GCAUGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 186583 | 0.68 | 0.954337 |
Target: 5'- --aCCGAGGACGGCGgcgCUcCGUACg-- -3' miRNA: 3'- cgcGGCUCCUGUCGUa--GA-GCAUGagc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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