Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 15857 | 3' | -54.7 | NC_004065.1 | + | 204767 | 0.73 | 0.763489 |
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Target: 5'- -gGCCGGGGACAGCucuuacuAUCUCauagccgACUCGa -3' miRNA: 3'- cgCGGCUCCUGUCG-------UAGAGca-----UGAGC- -5' |
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| 15857 | 3' | -54.7 | NC_004065.1 | + | 142791 | 0.73 | 0.72671 |
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Target: 5'- gGCGCCGGGGGCGGcCAUCUuCGagaUCa -3' miRNA: 3'- -CGCGGCUCCUGUC-GUAGA-GCaugAGc -5' |
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| 15857 | 3' | -54.7 | NC_004065.1 | + | 227902 | 0.76 | 0.608289 |
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Target: 5'- cGCuCCGAGGAUAGCGUUUC-UACUCc -3' miRNA: 3'- -CGcGGCUCCUGUCGUAGAGcAUGAGc -5' |
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| 15857 | 3' | -54.7 | NC_004065.1 | + | 24236 | 0.76 | 0.598354 |
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Target: 5'- cGCGCC-AGGACAGgAUgUCGUugUUGg -3' miRNA: 3'- -CGCGGcUCCUGUCgUAgAGCAugAGC- -5' |
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| 15857 | 3' | -54.7 | NC_004065.1 | + | 127655 | 0.76 | 0.558914 |
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Target: 5'- gGCGCCGAGGGCGGCGggaccauguUCaCGUugUUGc -3' miRNA: 3'- -CGCGGCUCCUGUCGU---------AGaGCAugAGC- -5' |
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| 15857 | 3' | -54.7 | NC_004065.1 | + | 155580 | 0.77 | 0.549159 |
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Target: 5'- aCGCCGAGGACGGCGUgCUCGagGC-Ca -3' miRNA: 3'- cGCGGCUCCUGUCGUA-GAGCa-UGaGc -5' |
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| 15857 | 3' | -54.7 | NC_004065.1 | + | 152054 | 0.8 | 0.395081 |
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Target: 5'- uCGCCGcGGcCAGCGUCUCGggGCUCGa -3' miRNA: 3'- cGCGGCuCCuGUCGUAGAGCa-UGAGC- -5' |
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| 15857 | 3' | -54.7 | NC_004065.1 | + | 80559 | 1.11 | 0.004752 |
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Target: 5'- gGCGCCGAGGACAGCAUCUCGUACUCGa -3' miRNA: 3'- -CGCGGCUCCUGUCGUAGAGCAUGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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