miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15857 3' -54.7 NC_004065.1 + 80559 1.11 0.004752
Target:  5'- gGCGCCGAGGACAGCAUCUCGUACUCGa -3'
miRNA:   3'- -CGCGGCUCCUGUCGUAGAGCAUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 152054 0.8 0.395081
Target:  5'- uCGCCGcGGcCAGCGUCUCGggGCUCGa -3'
miRNA:   3'- cGCGGCuCCuGUCGUAGAGCa-UGAGC- -5'
15857 3' -54.7 NC_004065.1 + 155580 0.77 0.549159
Target:  5'- aCGCCGAGGACGGCGUgCUCGagGC-Ca -3'
miRNA:   3'- cGCGGCUCCUGUCGUA-GAGCa-UGaGc -5'
15857 3' -54.7 NC_004065.1 + 127655 0.76 0.558914
Target:  5'- gGCGCCGAGGGCGGCGggaccauguUCaCGUugUUGc -3'
miRNA:   3'- -CGCGGCUCCUGUCGU---------AGaGCAugAGC- -5'
15857 3' -54.7 NC_004065.1 + 24236 0.76 0.598354
Target:  5'- cGCGCC-AGGACAGgAUgUCGUugUUGg -3'
miRNA:   3'- -CGCGGcUCCUGUCgUAgAGCAugAGC- -5'
15857 3' -54.7 NC_004065.1 + 227902 0.76 0.608289
Target:  5'- cGCuCCGAGGAUAGCGUUUC-UACUCc -3'
miRNA:   3'- -CGcGGCUCCUGUCGUAGAGcAUGAGc -5'
15857 3' -54.7 NC_004065.1 + 142791 0.73 0.72671
Target:  5'- gGCGCCGGGGGCGGcCAUCUuCGagaUCa -3'
miRNA:   3'- -CGCGGCUCCUGUC-GUAGA-GCaugAGc -5'
15857 3' -54.7 NC_004065.1 + 204767 0.73 0.763489
Target:  5'- -gGCCGGGGACAGCucuuacuAUCUCauagccgACUCGa -3'
miRNA:   3'- cgCGGCUCCUGUCG-------UAGAGca-----UGAGC- -5'
15857 3' -54.7 NC_004065.1 + 99938 0.72 0.782629
Target:  5'- gGCGCCGA--ACGGCAUCgcCGUAgUCGa -3'
miRNA:   3'- -CGCGGCUccUGUCGUAGa-GCAUgAGC- -5'
15857 3' -54.7 NC_004065.1 + 148837 0.72 0.782629
Target:  5'- cGCGuuGGGGAuCAGC-UCUCccgACUCGg -3'
miRNA:   3'- -CGCggCUCCU-GUCGuAGAGca-UGAGC- -5'
15857 3' -54.7 NC_004065.1 + 177221 0.72 0.79155
Target:  5'- uUGCCGAGGGCgGGCGcgCUC-UGCUCGc -3'
miRNA:   3'- cGCGGCUCCUG-UCGUa-GAGcAUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 112854 0.72 0.799462
Target:  5'- uUGCCGucGGACAGCAgCUCGUccggcagACUCa -3'
miRNA:   3'- cGCGGCu-CCUGUCGUaGAGCA-------UGAGc -5'
15857 3' -54.7 NC_004065.1 + 123254 0.71 0.825791
Target:  5'- cGUGgCGAG-ACGGCAUUUCGUGCUa- -3'
miRNA:   3'- -CGCgGCUCcUGUCGUAGAGCAUGAgc -5'
15857 3' -54.7 NC_004065.1 + 116011 0.71 0.84194
Target:  5'- uGCGCCGcgGGGGCAGC-UCUC-UGC-CGa -3'
miRNA:   3'- -CGCGGC--UCCUGUCGuAGAGcAUGaGC- -5'
15857 3' -54.7 NC_004065.1 + 153307 0.71 0.84194
Target:  5'- cCGCCGAGGAguGCAacCUCGacgcGCUCu -3'
miRNA:   3'- cGCGGCUCCUguCGUa-GAGCa---UGAGc -5'
15857 3' -54.7 NC_004065.1 + 115068 0.71 0.849747
Target:  5'- cGCGCgCGAGGAC-GCGgcCUCGgucgGCUCu -3'
miRNA:   3'- -CGCG-GCUCCUGuCGUa-GAGCa---UGAGc -5'
15857 3' -54.7 NC_004065.1 + 155843 0.7 0.872022
Target:  5'- uGCGCUgGAGGGCGGuCAUCg---GCUCGa -3'
miRNA:   3'- -CGCGG-CUCCUGUC-GUAGagcaUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 189088 0.7 0.878353
Target:  5'- gGgGCuCGAGGACcucgcccGGUGUCUCuGUGCUCa -3'
miRNA:   3'- -CgCG-GCUCCUG-------UCGUAGAG-CAUGAGc -5'
15857 3' -54.7 NC_004065.1 + 196628 0.7 0.885862
Target:  5'- uGCGCCG-GGGCgAGCGcCUCGagagGCUCc -3'
miRNA:   3'- -CGCGGCuCCUG-UCGUaGAGCa---UGAGc -5'
15857 3' -54.7 NC_004065.1 + 59014 0.7 0.898852
Target:  5'- -gGCCaGGGuCGGCggUUCGUGCUCGc -3'
miRNA:   3'- cgCGGcUCCuGUCGuaGAGCAUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.