miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15857 3' -54.7 NC_004065.1 + 59014 0.7 0.898852
Target:  5'- -gGCCaGGGuCGGCggUUCGUGCUCGc -3'
miRNA:   3'- cgCGGcUCCuGUCGuaGAGCAUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 130530 0.69 0.905019
Target:  5'- cGCGCCaGGGACcccaacggcGGCAUCUCGcACgUCu -3'
miRNA:   3'- -CGCGGcUCCUG---------UCGUAGAGCaUG-AGc -5'
15857 3' -54.7 NC_004065.1 + 199921 0.69 0.905019
Target:  5'- cCGCCGGGGcuGCAGC-UCUCGcUAC-CGc -3'
miRNA:   3'- cGCGGCUCC--UGUCGuAGAGC-AUGaGC- -5'
15857 3' -54.7 NC_004065.1 + 200793 0.69 0.905019
Target:  5'- gGUGgCGGGcGACGGCGUCUCG-GCgCGg -3'
miRNA:   3'- -CGCgGCUC-CUGUCGUAGAGCaUGaGC- -5'
15857 3' -54.7 NC_004065.1 + 223831 0.69 0.910964
Target:  5'- cUGUCgGAGGACgcgAGCGacaaCUCGUACUCGg -3'
miRNA:   3'- cGCGG-CUCCUG---UCGUa---GAGCAUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 102293 0.69 0.916685
Target:  5'- uCGgaCGAGGACAGCGUCgagaggC-UGCUCGa -3'
miRNA:   3'- cGCg-GCUCCUGUCGUAGa-----GcAUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 167646 0.68 0.932492
Target:  5'- uCGUCGgcGGGACGGCcgUacCGUGCUCGg -3'
miRNA:   3'- cGCGGC--UCCUGUCGuaGa-GCAUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 178358 0.68 0.932492
Target:  5'- -gGuCUGaAGGGCAGguUCUUGUACUCc -3'
miRNA:   3'- cgC-GGC-UCCUGUCguAGAGCAUGAGc -5'
15857 3' -54.7 NC_004065.1 + 144078 0.68 0.941899
Target:  5'- cGCGUCGAGGACGGCGaugagaUCGgcgACg-- -3'
miRNA:   3'- -CGCGGCUCCUGUCGUag----AGCa--UGagc -5'
15857 3' -54.7 NC_004065.1 + 130597 0.68 0.941899
Target:  5'- aUGUCGAGG-CGGCGUCUgccGCUCGg -3'
miRNA:   3'- cGCGGCUCCuGUCGUAGAgcaUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 186553 0.68 0.941899
Target:  5'- gGCGCCGAGGACA------CGUGCUgCGg -3'
miRNA:   3'- -CGCGGCUCCUGUcguagaGCAUGA-GC- -5'
15857 3' -54.7 NC_004065.1 + 59331 0.68 0.944979
Target:  5'- cGCGCCGcGGGCGGCGUgcgauuuccagcucCgagugCGUGgUCGa -3'
miRNA:   3'- -CGCGGCuCCUGUCGUA--------------Ga----GCAUgAGC- -5'
15857 3' -54.7 NC_004065.1 + 13100 0.68 0.946265
Target:  5'- cGCGuCCGAGGACgaagucuuggAGCAUCUUcuuCUCu -3'
miRNA:   3'- -CGC-GGCUCCUG----------UCGUAGAGcauGAGc -5'
15857 3' -54.7 NC_004065.1 + 43795 0.68 0.946265
Target:  5'- -gGCCaGGGGCAGCAUCgcuccaUCGUGgUCc -3'
miRNA:   3'- cgCGGcUCCUGUCGUAG------AGCAUgAGc -5'
15857 3' -54.7 NC_004065.1 + 76521 0.68 0.946266
Target:  5'- uCGuuGAGGACGGCGg--CGUGUUCGc -3'
miRNA:   3'- cGCggCUCCUGUCGUagaGCAUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 27701 0.68 0.954337
Target:  5'- uGCGUa-GGGAUcgGGCGUCUggccCGUGCUCGc -3'
miRNA:   3'- -CGCGgcUCCUG--UCGUAGA----GCAUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 186583 0.68 0.954337
Target:  5'- --aCCGAGGACGGCGgcgCUcCGUACg-- -3'
miRNA:   3'- cgcGGCUCCUGUCGUa--GA-GCAUGagc -5'
15857 3' -54.7 NC_004065.1 + 179739 0.68 0.954337
Target:  5'- uCGCCGcgcGGACGGCGgUCUCGggGCcCGa -3'
miRNA:   3'- cGCGGCu--CCUGUCGU-AGAGCa-UGaGC- -5'
15857 3' -54.7 NC_004065.1 + 124483 0.67 0.960518
Target:  5'- uGCGCCGGguccagggccgcgcGGAucucCAGCAUCUgcgCGUuCUCGg -3'
miRNA:   3'- -CGCGGCU--------------CCU----GUCGUAGA---GCAuGAGC- -5'
15857 3' -54.7 NC_004065.1 + 45998 0.67 0.961546
Target:  5'- gGCGCCGuGG-CGGCGUUga--ACUCGg -3'
miRNA:   3'- -CGCGGCuCCuGUCGUAGagcaUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.