Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15857 | 3' | -54.7 | NC_004065.1 | + | 178358 | 0.68 | 0.932492 |
Target: 5'- -gGuCUGaAGGGCAGguUCUUGUACUCc -3' miRNA: 3'- cgC-GGC-UCCUGUCguAGAGCAUGAGc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 167646 | 0.68 | 0.932492 |
Target: 5'- uCGUCGgcGGGACGGCcgUacCGUGCUCGg -3' miRNA: 3'- cGCGGC--UCCUGUCGuaGa-GCAUGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 102293 | 0.69 | 0.916685 |
Target: 5'- uCGgaCGAGGACAGCGUCgagaggC-UGCUCGa -3' miRNA: 3'- cGCg-GCUCCUGUCGUAGa-----GcAUGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 223831 | 0.69 | 0.910964 |
Target: 5'- cUGUCgGAGGACgcgAGCGacaaCUCGUACUCGg -3' miRNA: 3'- cGCGG-CUCCUG---UCGUa---GAGCAUGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 200793 | 0.69 | 0.905019 |
Target: 5'- gGUGgCGGGcGACGGCGUCUCG-GCgCGg -3' miRNA: 3'- -CGCgGCUC-CUGUCGUAGAGCaUGaGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 199921 | 0.69 | 0.905019 |
Target: 5'- cCGCCGGGGcuGCAGC-UCUCGcUAC-CGc -3' miRNA: 3'- cGCGGCUCC--UGUCGuAGAGC-AUGaGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 130530 | 0.69 | 0.905019 |
Target: 5'- cGCGCCaGGGACcccaacggcGGCAUCUCGcACgUCu -3' miRNA: 3'- -CGCGGcUCCUG---------UCGUAGAGCaUG-AGc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 59014 | 0.7 | 0.898852 |
Target: 5'- -gGCCaGGGuCGGCggUUCGUGCUCGc -3' miRNA: 3'- cgCGGcUCCuGUCGuaGAGCAUGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 137880 | 0.7 | 0.898852 |
Target: 5'- aGCGUCGGGGugaucuuCAGCGcgCUCGUcUUCGg -3' miRNA: 3'- -CGCGGCUCCu------GUCGUa-GAGCAuGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 196628 | 0.7 | 0.885862 |
Target: 5'- uGCGCCG-GGGCgAGCGcCUCGagagGCUCc -3' miRNA: 3'- -CGCGGCuCCUG-UCGUaGAGCa---UGAGc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 189088 | 0.7 | 0.878353 |
Target: 5'- gGgGCuCGAGGACcucgcccGGUGUCUCuGUGCUCa -3' miRNA: 3'- -CgCG-GCUCCUG-------UCGUAGAG-CAUGAGc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 155843 | 0.7 | 0.872022 |
Target: 5'- uGCGCUgGAGGGCGGuCAUCg---GCUCGa -3' miRNA: 3'- -CGCGG-CUCCUGUC-GUAGagcaUGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 115068 | 0.71 | 0.849747 |
Target: 5'- cGCGCgCGAGGAC-GCGgcCUCGgucgGCUCu -3' miRNA: 3'- -CGCG-GCUCCUGuCGUa-GAGCa---UGAGc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 116011 | 0.71 | 0.84194 |
Target: 5'- uGCGCCGcgGGGGCAGC-UCUC-UGC-CGa -3' miRNA: 3'- -CGCGGC--UCCUGUCGuAGAGcAUGaGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 153307 | 0.71 | 0.84194 |
Target: 5'- cCGCCGAGGAguGCAacCUCGacgcGCUCu -3' miRNA: 3'- cGCGGCUCCUguCGUa-GAGCa---UGAGc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 123254 | 0.71 | 0.825791 |
Target: 5'- cGUGgCGAG-ACGGCAUUUCGUGCUa- -3' miRNA: 3'- -CGCgGCUCcUGUCGUAGAGCAUGAgc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 112854 | 0.72 | 0.799462 |
Target: 5'- uUGCCGucGGACAGCAgCUCGUccggcagACUCa -3' miRNA: 3'- cGCGGCu-CCUGUCGUaGAGCA-------UGAGc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 177221 | 0.72 | 0.79155 |
Target: 5'- uUGCCGAGGGCgGGCGcgCUC-UGCUCGc -3' miRNA: 3'- cGCGGCUCCUG-UCGUa-GAGcAUGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 148837 | 0.72 | 0.782629 |
Target: 5'- cGCGuuGGGGAuCAGC-UCUCccgACUCGg -3' miRNA: 3'- -CGCggCUCCU-GUCGuAGAGca-UGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 99938 | 0.72 | 0.782629 |
Target: 5'- gGCGCCGA--ACGGCAUCgcCGUAgUCGa -3' miRNA: 3'- -CGCGGCUccUGUCGUAGa-GCAUgAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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