miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15857 3' -54.7 NC_004065.1 + 109196 0.66 0.98252
Target:  5'- -gGCCGGcGGCGGCGcCUCGgccucuuccUGCUCGg -3'
miRNA:   3'- cgCGGCUcCUGUCGUaGAGC---------AUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 112854 0.72 0.799462
Target:  5'- uUGCCGucGGACAGCAgCUCGUccggcagACUCa -3'
miRNA:   3'- cGCGGCu-CCUGUCGUaGAGCA-------UGAGc -5'
15857 3' -54.7 NC_004065.1 + 114889 0.67 0.964836
Target:  5'- gGCGguuCCGAGGcCAuCAUCUCGgugGCUCc -3'
miRNA:   3'- -CGC---GGCUCCuGUcGUAGAGCa--UGAGc -5'
15857 3' -54.7 NC_004065.1 + 115068 0.71 0.849747
Target:  5'- cGCGCgCGAGGAC-GCGgcCUCGgucgGCUCu -3'
miRNA:   3'- -CGCG-GCUCCUGuCGUa-GAGCa---UGAGc -5'
15857 3' -54.7 NC_004065.1 + 116011 0.71 0.84194
Target:  5'- uGCGCCGcgGGGGCAGC-UCUC-UGC-CGa -3'
miRNA:   3'- -CGCGGC--UCCUGUCGuAGAGcAUGaGC- -5'
15857 3' -54.7 NC_004065.1 + 121630 0.66 0.976028
Target:  5'- uGCccCCGAGGAUGGCGUUgagcgcgucgUCGUcCUCGa -3'
miRNA:   3'- -CGc-GGCUCCUGUCGUAG----------AGCAuGAGC- -5'
15857 3' -54.7 NC_004065.1 + 123254 0.71 0.825791
Target:  5'- cGUGgCGAG-ACGGCAUUUCGUGCUa- -3'
miRNA:   3'- -CGCgGCUCcUGUCGUAGAGCAUGAgc -5'
15857 3' -54.7 NC_004065.1 + 124483 0.67 0.960518
Target:  5'- uGCGCCGGguccagggccgcgcGGAucucCAGCAUCUgcgCGUuCUCGg -3'
miRNA:   3'- -CGCGGCU--------------CCU----GUCGUAGA---GCAuGAGC- -5'
15857 3' -54.7 NC_004065.1 + 127655 0.76 0.558914
Target:  5'- gGCGCCGAGGGCGGCGggaccauguUCaCGUugUUGc -3'
miRNA:   3'- -CGCGGCUCCUGUCGU---------AGaGCAugAGC- -5'
15857 3' -54.7 NC_004065.1 + 130530 0.69 0.905019
Target:  5'- cGCGCCaGGGACcccaacggcGGCAUCUCGcACgUCu -3'
miRNA:   3'- -CGCGGcUCCUG---------UCGUAGAGCaUG-AGc -5'
15857 3' -54.7 NC_004065.1 + 130597 0.68 0.941899
Target:  5'- aUGUCGAGG-CGGCGUCUgccGCUCGg -3'
miRNA:   3'- cGCGGCUCCuGUCGUAGAgcaUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 132460 0.67 0.969969
Target:  5'- gGCGCCGAGGuCAGCuUCgUCaggaagcaggugcuGUcGCUCGu -3'
miRNA:   3'- -CGCGGCUCCuGUCGuAG-AG--------------CA-UGAGC- -5'
15857 3' -54.7 NC_004065.1 + 137880 0.7 0.898852
Target:  5'- aGCGUCGGGGugaucuuCAGCGcgCUCGUcUUCGg -3'
miRNA:   3'- -CGCGGCUCCu------GUCGUa-GAGCAuGAGC- -5'
15857 3' -54.7 NC_004065.1 + 138154 0.66 0.975785
Target:  5'- cCGCCGGGGGCuucacguauauaaAGguUCUgGUGCcgCGg -3'
miRNA:   3'- cGCGGCUCCUG-------------UCguAGAgCAUGa-GC- -5'
15857 3' -54.7 NC_004065.1 + 141206 0.66 0.976028
Target:  5'- cGCGCCGAcGACAgGCAgaUCgcgCGUGCg-- -3'
miRNA:   3'- -CGCGGCUcCUGU-CGU--AGa--GCAUGagc -5'
15857 3' -54.7 NC_004065.1 + 142791 0.73 0.72671
Target:  5'- gGCGCCGGGGGCGGcCAUCUuCGagaUCa -3'
miRNA:   3'- -CGCGGCUCCUGUC-GUAGA-GCaugAGc -5'
15857 3' -54.7 NC_004065.1 + 144078 0.68 0.941899
Target:  5'- cGCGUCGAGGACGGCGaugagaUCGgcgACg-- -3'
miRNA:   3'- -CGCGGCUCCUGUCGUag----AGCa--UGagc -5'
15857 3' -54.7 NC_004065.1 + 148837 0.72 0.782629
Target:  5'- cGCGuuGGGGAuCAGC-UCUCccgACUCGg -3'
miRNA:   3'- -CGCggCUCCU-GUCGuAGAGca-UGAGC- -5'
15857 3' -54.7 NC_004065.1 + 151529 0.66 0.976028
Target:  5'- cGCuGCCGGccGGGCGGUGUCgggCGcGCUUGa -3'
miRNA:   3'- -CG-CGGCU--CCUGUCGUAGa--GCaUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 152054 0.8 0.395081
Target:  5'- uCGCCGcGGcCAGCGUCUCGggGCUCGa -3'
miRNA:   3'- cGCGGCuCCuGUCGUAGAGCa-UGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.