miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15857 3' -54.7 NC_004065.1 + 153307 0.71 0.84194
Target:  5'- cCGCCGAGGAguGCAacCUCGacgcGCUCu -3'
miRNA:   3'- cGCGGCUCCUguCGUa-GAGCa---UGAGc -5'
15857 3' -54.7 NC_004065.1 + 155580 0.77 0.549159
Target:  5'- aCGCCGAGGACGGCGUgCUCGagGC-Ca -3'
miRNA:   3'- cGCGGCUCCUGUCGUA-GAGCa-UGaGc -5'
15857 3' -54.7 NC_004065.1 + 155843 0.7 0.872022
Target:  5'- uGCGCUgGAGGGCGGuCAUCg---GCUCGa -3'
miRNA:   3'- -CGCGG-CUCCUGUC-GUAGagcaUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 165745 0.66 0.979679
Target:  5'- cGCGCCGcGccuuccaggaacucGGACAGCGUCU-GUagcacccGCUCGu -3'
miRNA:   3'- -CGCGGC-U--------------CCUGUCGUAGAgCA-------UGAGC- -5'
15857 3' -54.7 NC_004065.1 + 167646 0.68 0.932492
Target:  5'- uCGUCGgcGGGACGGCcgUacCGUGCUCGg -3'
miRNA:   3'- cGCGGC--UCCUGUCGuaGa-GCAUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 168726 0.66 0.976028
Target:  5'- -gGUCGAcGGgGGCGUCUCGUACa-- -3'
miRNA:   3'- cgCGGCUcCUgUCGUAGAGCAUGagc -5'
15857 3' -54.7 NC_004065.1 + 174260 0.67 0.970815
Target:  5'- gGCGCCGA-GACcGcCAUCUUccACUCGg -3'
miRNA:   3'- -CGCGGCUcCUGuC-GUAGAGcaUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 174609 0.67 0.970815
Target:  5'- cGCGCCccGGACAGCccaucaggccgGUCUucUGUccGCUCGg -3'
miRNA:   3'- -CGCGGcuCCUGUCG-----------UAGA--GCA--UGAGC- -5'
15857 3' -54.7 NC_004065.1 + 177221 0.72 0.79155
Target:  5'- uUGCCGAGGGCgGGCGcgCUC-UGCUCGc -3'
miRNA:   3'- cGCGGCUCCUG-UCGUa-GAGcAUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 177503 0.67 0.964836
Target:  5'- cCGCCGGGGGuCAGUAUCcCuUGcCUCGg -3'
miRNA:   3'- cGCGGCUCCU-GUCGUAGaGcAU-GAGC- -5'
15857 3' -54.7 NC_004065.1 + 178358 0.68 0.932492
Target:  5'- -gGuCUGaAGGGCAGguUCUUGUACUCc -3'
miRNA:   3'- cgC-GGC-UCCUGUCguAGAGCAUGAGc -5'
15857 3' -54.7 NC_004065.1 + 179440 0.66 0.98252
Target:  5'- gGCGcCCGAaGACAGUAgg--GUGCUCGa -3'
miRNA:   3'- -CGC-GGCUcCUGUCGUagagCAUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 179739 0.68 0.954337
Target:  5'- uCGCCGcgcGGACGGCGgUCUCGggGCcCGa -3'
miRNA:   3'- cGCGGCu--CCUGUCGU-AGAGCa-UGaGC- -5'
15857 3' -54.7 NC_004065.1 + 180966 0.66 0.973514
Target:  5'- uUGCCGGucagcuggccGGACGGgGUUUCGguccgGCUCGu -3'
miRNA:   3'- cGCGGCU----------CCUGUCgUAGAGCa----UGAGC- -5'
15857 3' -54.7 NC_004065.1 + 183506 0.66 0.980524
Target:  5'- gGUGCaCGAccGACAGgGUCUCGaacgGCUCGc -3'
miRNA:   3'- -CGCG-GCUc-CUGUCgUAGAGCa---UGAGC- -5'
15857 3' -54.7 NC_004065.1 + 186553 0.68 0.941899
Target:  5'- gGCGCCGAGGACA------CGUGCUgCGg -3'
miRNA:   3'- -CGCGGCUCCUGUcguagaGCAUGA-GC- -5'
15857 3' -54.7 NC_004065.1 + 186583 0.68 0.954337
Target:  5'- --aCCGAGGACGGCGgcgCUcCGUACg-- -3'
miRNA:   3'- cgcGGCUCCUGUCGUa--GA-GCAUGagc -5'
15857 3' -54.7 NC_004065.1 + 189088 0.7 0.878353
Target:  5'- gGgGCuCGAGGACcucgcccGGUGUCUCuGUGCUCa -3'
miRNA:   3'- -CgCG-GCUCCUG-------UCGUAGAG-CAUGAGc -5'
15857 3' -54.7 NC_004065.1 + 191465 0.67 0.966714
Target:  5'- aCGCCGAGGugcggcaccaccacGCAcGCGuguccccccagguUCUCGUGcCUCGg -3'
miRNA:   3'- cGCGGCUCC--------------UGU-CGU-------------AGAGCAU-GAGC- -5'
15857 3' -54.7 NC_004065.1 + 196628 0.7 0.885862
Target:  5'- uGCGCCG-GGGCgAGCGcCUCGagagGCUCc -3'
miRNA:   3'- -CGCGGCuCCUG-UCGUaGAGCa---UGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.