Results 61 - 68 of 68 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 15857 | 3' | -54.7 | NC_004065.1 | + | 197120 | 0.66 | 0.979247 |
|
Target: 5'- uCGUCGccuccgacccccgacAGGACGGCAUCUCGgACg-- -3' miRNA: 3'- cGCGGC---------------UCCUGUCGUAGAGCaUGagc -5' |
|||||||
| 15857 | 3' | -54.7 | NC_004065.1 | + | 199921 | 0.69 | 0.905019 |
|
Target: 5'- cCGCCGGGGcuGCAGC-UCUCGcUAC-CGc -3' miRNA: 3'- cGCGGCUCC--UGUCGuAGAGC-AUGaGC- -5' |
|||||||
| 15857 | 3' | -54.7 | NC_004065.1 | + | 200342 | 0.67 | 0.964837 |
|
Target: 5'- gGCGCCGAGGcuCAGCAaccugC-CGgACUCu -3' miRNA: 3'- -CGCGGCUCCu-GUCGUa----GaGCaUGAGc -5' |
|||||||
| 15857 | 3' | -54.7 | NC_004065.1 | + | 200793 | 0.69 | 0.905019 |
|
Target: 5'- gGUGgCGGGcGACGGCGUCUCG-GCgCGg -3' miRNA: 3'- -CGCgGCUC-CUGUCGUAGAGCaUGaGC- -5' |
|||||||
| 15857 | 3' | -54.7 | NC_004065.1 | + | 204767 | 0.73 | 0.763489 |
|
Target: 5'- -gGCCGGGGACAGCucuuacuAUCUCauagccgACUCGa -3' miRNA: 3'- cgCGGCUCCUGUCG-------UAGAGca-----UGAGC- -5' |
|||||||
| 15857 | 3' | -54.7 | NC_004065.1 | + | 223136 | 0.66 | 0.976028 |
|
Target: 5'- cGCGUagaUGAGGGCgAGCAUCcCGgcCUUGa -3' miRNA: 3'- -CGCG---GCUCCUG-UCGUAGaGCauGAGC- -5' |
|||||||
| 15857 | 3' | -54.7 | NC_004065.1 | + | 223831 | 0.69 | 0.910964 |
|
Target: 5'- cUGUCgGAGGACgcgAGCGacaaCUCGUACUCGg -3' miRNA: 3'- cGCGG-CUCCUG---UCGUa---GAGCAUGAGC- -5' |
|||||||
| 15857 | 3' | -54.7 | NC_004065.1 | + | 227902 | 0.76 | 0.608289 |
|
Target: 5'- cGCuCCGAGGAUAGCGUUUC-UACUCc -3' miRNA: 3'- -CGcGGCUCCUGUCGUAGAGcAUGAGc -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home