Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15857 | 3' | -54.7 | NC_004065.1 | + | 227902 | 0.76 | 0.608289 |
Target: 5'- cGCuCCGAGGAUAGCGUUUC-UACUCc -3' miRNA: 3'- -CGcGGCUCCUGUCGUAGAGcAUGAGc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 223831 | 0.69 | 0.910964 |
Target: 5'- cUGUCgGAGGACgcgAGCGacaaCUCGUACUCGg -3' miRNA: 3'- cGCGG-CUCCUG---UCGUa---GAGCAUGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 223136 | 0.66 | 0.976028 |
Target: 5'- cGCGUagaUGAGGGCgAGCAUCcCGgcCUUGa -3' miRNA: 3'- -CGCG---GCUCCUG-UCGUAGaGCauGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 204767 | 0.73 | 0.763489 |
Target: 5'- -gGCCGGGGACAGCucuuacuAUCUCauagccgACUCGa -3' miRNA: 3'- cgCGGCUCCUGUCG-------UAGAGca-----UGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 200793 | 0.69 | 0.905019 |
Target: 5'- gGUGgCGGGcGACGGCGUCUCG-GCgCGg -3' miRNA: 3'- -CGCgGCUC-CUGUCGUAGAGCaUGaGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 200342 | 0.67 | 0.964837 |
Target: 5'- gGCGCCGAGGcuCAGCAaccugC-CGgACUCu -3' miRNA: 3'- -CGCGGCUCCu-GUCGUa----GaGCaUGAGc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 199921 | 0.69 | 0.905019 |
Target: 5'- cCGCCGGGGcuGCAGC-UCUCGcUAC-CGc -3' miRNA: 3'- cGCGGCUCC--UGUCGuAGAGC-AUGaGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 197120 | 0.66 | 0.979247 |
Target: 5'- uCGUCGccuccgacccccgacAGGACGGCAUCUCGgACg-- -3' miRNA: 3'- cGCGGC---------------UCCUGUCGUAGAGCaUGagc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 196628 | 0.7 | 0.885862 |
Target: 5'- uGCGCCG-GGGCgAGCGcCUCGagagGCUCc -3' miRNA: 3'- -CGCGGCuCCUG-UCGUaGAGCa---UGAGc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 191465 | 0.67 | 0.966714 |
Target: 5'- aCGCCGAGGugcggcaccaccacGCAcGCGuguccccccagguUCUCGUGcCUCGg -3' miRNA: 3'- cGCGGCUCC--------------UGU-CGU-------------AGAGCAU-GAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 189088 | 0.7 | 0.878353 |
Target: 5'- gGgGCuCGAGGACcucgcccGGUGUCUCuGUGCUCa -3' miRNA: 3'- -CgCG-GCUCCUG-------UCGUAGAG-CAUGAGc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 186583 | 0.68 | 0.954337 |
Target: 5'- --aCCGAGGACGGCGgcgCUcCGUACg-- -3' miRNA: 3'- cgcGGCUCCUGUCGUa--GA-GCAUGagc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 186553 | 0.68 | 0.941899 |
Target: 5'- gGCGCCGAGGACA------CGUGCUgCGg -3' miRNA: 3'- -CGCGGCUCCUGUcguagaGCAUGA-GC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 183506 | 0.66 | 0.980524 |
Target: 5'- gGUGCaCGAccGACAGgGUCUCGaacgGCUCGc -3' miRNA: 3'- -CGCG-GCUc-CUGUCgUAGAGCa---UGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 180966 | 0.66 | 0.973514 |
Target: 5'- uUGCCGGucagcuggccGGACGGgGUUUCGguccgGCUCGu -3' miRNA: 3'- cGCGGCU----------CCUGUCgUAGAGCa----UGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 179739 | 0.68 | 0.954337 |
Target: 5'- uCGCCGcgcGGACGGCGgUCUCGggGCcCGa -3' miRNA: 3'- cGCGGCu--CCUGUCGU-AGAGCa-UGaGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 179440 | 0.66 | 0.98252 |
Target: 5'- gGCGcCCGAaGACAGUAgg--GUGCUCGa -3' miRNA: 3'- -CGC-GGCUcCUGUCGUagagCAUGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 178358 | 0.68 | 0.932492 |
Target: 5'- -gGuCUGaAGGGCAGguUCUUGUACUCc -3' miRNA: 3'- cgC-GGC-UCCUGUCguAGAGCAUGAGc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 177503 | 0.67 | 0.964836 |
Target: 5'- cCGCCGGGGGuCAGUAUCcCuUGcCUCGg -3' miRNA: 3'- cGCGGCUCCU-GUCGUAGaGcAU-GAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 177221 | 0.72 | 0.79155 |
Target: 5'- uUGCCGAGGGCgGGCGcgCUC-UGCUCGc -3' miRNA: 3'- cGCGGCUCCUG-UCGUa-GAGcAUGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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