Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15857 | 3' | -54.7 | NC_004065.1 | + | 174609 | 0.67 | 0.970815 |
Target: 5'- cGCGCCccGGACAGCccaucaggccgGUCUucUGUccGCUCGg -3' miRNA: 3'- -CGCGGcuCCUGUCG-----------UAGA--GCA--UGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 174260 | 0.67 | 0.970815 |
Target: 5'- gGCGCCGA-GACcGcCAUCUUccACUCGg -3' miRNA: 3'- -CGCGGCUcCUGuC-GUAGAGcaUGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 168726 | 0.66 | 0.976028 |
Target: 5'- -gGUCGAcGGgGGCGUCUCGUACa-- -3' miRNA: 3'- cgCGGCUcCUgUCGUAGAGCAUGagc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 167646 | 0.68 | 0.932492 |
Target: 5'- uCGUCGgcGGGACGGCcgUacCGUGCUCGg -3' miRNA: 3'- cGCGGC--UCCUGUCGuaGa-GCAUGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 165745 | 0.66 | 0.979679 |
Target: 5'- cGCGCCGcGccuuccaggaacucGGACAGCGUCU-GUagcacccGCUCGu -3' miRNA: 3'- -CGCGGC-U--------------CCUGUCGUAGAgCA-------UGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 155843 | 0.7 | 0.872022 |
Target: 5'- uGCGCUgGAGGGCGGuCAUCg---GCUCGa -3' miRNA: 3'- -CGCGG-CUCCUGUC-GUAGagcaUGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 155580 | 0.77 | 0.549159 |
Target: 5'- aCGCCGAGGACGGCGUgCUCGagGC-Ca -3' miRNA: 3'- cGCGGCUCCUGUCGUA-GAGCa-UGaGc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 153307 | 0.71 | 0.84194 |
Target: 5'- cCGCCGAGGAguGCAacCUCGacgcGCUCu -3' miRNA: 3'- cGCGGCUCCUguCGUa-GAGCa---UGAGc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 152054 | 0.8 | 0.395081 |
Target: 5'- uCGCCGcGGcCAGCGUCUCGggGCUCGa -3' miRNA: 3'- cGCGGCuCCuGUCGUAGAGCa-UGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 151529 | 0.66 | 0.976028 |
Target: 5'- cGCuGCCGGccGGGCGGUGUCgggCGcGCUUGa -3' miRNA: 3'- -CG-CGGCU--CCUGUCGUAGa--GCaUGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 148837 | 0.72 | 0.782629 |
Target: 5'- cGCGuuGGGGAuCAGC-UCUCccgACUCGg -3' miRNA: 3'- -CGCggCUCCU-GUCGuAGAGca-UGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 144078 | 0.68 | 0.941899 |
Target: 5'- cGCGUCGAGGACGGCGaugagaUCGgcgACg-- -3' miRNA: 3'- -CGCGGCUCCUGUCGUag----AGCa--UGagc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 142791 | 0.73 | 0.72671 |
Target: 5'- gGCGCCGGGGGCGGcCAUCUuCGagaUCa -3' miRNA: 3'- -CGCGGCUCCUGUC-GUAGA-GCaugAGc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 141206 | 0.66 | 0.976028 |
Target: 5'- cGCGCCGAcGACAgGCAgaUCgcgCGUGCg-- -3' miRNA: 3'- -CGCGGCUcCUGU-CGU--AGa--GCAUGagc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 138154 | 0.66 | 0.975785 |
Target: 5'- cCGCCGGGGGCuucacguauauaaAGguUCUgGUGCcgCGg -3' miRNA: 3'- cGCGGCUCCUG-------------UCguAGAgCAUGa-GC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 137880 | 0.7 | 0.898852 |
Target: 5'- aGCGUCGGGGugaucuuCAGCGcgCUCGUcUUCGg -3' miRNA: 3'- -CGCGGCUCCu------GUCGUa-GAGCAuGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 132460 | 0.67 | 0.969969 |
Target: 5'- gGCGCCGAGGuCAGCuUCgUCaggaagcaggugcuGUcGCUCGu -3' miRNA: 3'- -CGCGGCUCCuGUCGuAG-AG--------------CA-UGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 130597 | 0.68 | 0.941899 |
Target: 5'- aUGUCGAGG-CGGCGUCUgccGCUCGg -3' miRNA: 3'- cGCGGCUCCuGUCGUAGAgcaUGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 130530 | 0.69 | 0.905019 |
Target: 5'- cGCGCCaGGGACcccaacggcGGCAUCUCGcACgUCu -3' miRNA: 3'- -CGCGGcUCCUG---------UCGUAGAGCaUG-AGc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 127655 | 0.76 | 0.558914 |
Target: 5'- gGCGCCGAGGGCGGCGggaccauguUCaCGUugUUGc -3' miRNA: 3'- -CGCGGCUCCUGUCGU---------AGaGCAugAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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