miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15857 3' -54.7 NC_004065.1 + 124483 0.67 0.960518
Target:  5'- uGCGCCGGguccagggccgcgcGGAucucCAGCAUCUgcgCGUuCUCGg -3'
miRNA:   3'- -CGCGGCU--------------CCU----GUCGUAGA---GCAuGAGC- -5'
15857 3' -54.7 NC_004065.1 + 123254 0.71 0.825791
Target:  5'- cGUGgCGAG-ACGGCAUUUCGUGCUa- -3'
miRNA:   3'- -CGCgGCUCcUGUCGUAGAGCAUGAgc -5'
15857 3' -54.7 NC_004065.1 + 121630 0.66 0.976028
Target:  5'- uGCccCCGAGGAUGGCGUUgagcgcgucgUCGUcCUCGa -3'
miRNA:   3'- -CGc-GGCUCCUGUCGUAG----------AGCAuGAGC- -5'
15857 3' -54.7 NC_004065.1 + 116011 0.71 0.84194
Target:  5'- uGCGCCGcgGGGGCAGC-UCUC-UGC-CGa -3'
miRNA:   3'- -CGCGGC--UCCUGUCGuAGAGcAUGaGC- -5'
15857 3' -54.7 NC_004065.1 + 115068 0.71 0.849747
Target:  5'- cGCGCgCGAGGAC-GCGgcCUCGgucgGCUCu -3'
miRNA:   3'- -CGCG-GCUCCUGuCGUa-GAGCa---UGAGc -5'
15857 3' -54.7 NC_004065.1 + 114889 0.67 0.964836
Target:  5'- gGCGguuCCGAGGcCAuCAUCUCGgugGCUCc -3'
miRNA:   3'- -CGC---GGCUCCuGUcGUAGAGCa--UGAGc -5'
15857 3' -54.7 NC_004065.1 + 112854 0.72 0.799462
Target:  5'- uUGCCGucGGACAGCAgCUCGUccggcagACUCa -3'
miRNA:   3'- cGCGGCu-CCUGUCGUaGAGCA-------UGAGc -5'
15857 3' -54.7 NC_004065.1 + 109196 0.66 0.98252
Target:  5'- -gGCCGGcGGCGGCGcCUCGgccucuuccUGCUCGg -3'
miRNA:   3'- cgCGGCUcCUGUCGUaGAGC---------AUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 102293 0.69 0.916685
Target:  5'- uCGgaCGAGGACAGCGUCgagaggC-UGCUCGa -3'
miRNA:   3'- cGCg-GCUCCUGUCGUAGa-----GcAUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 99938 0.72 0.782629
Target:  5'- gGCGCCGA--ACGGCAUCgcCGUAgUCGa -3'
miRNA:   3'- -CGCGGCUccUGUCGUAGa-GCAUgAGC- -5'
15857 3' -54.7 NC_004065.1 + 92016 0.66 0.973514
Target:  5'- uGCGCCgcaaucgcaGAGGACcGCGggcUCUUGgcgcGCUCGa -3'
miRNA:   3'- -CGCGG---------CUCCUGuCGU---AGAGCa---UGAGC- -5'
15857 3' -54.7 NC_004065.1 + 91127 0.67 0.970815
Target:  5'- uCGCUGAGcGCGGgGUCguagaaccCGUGCUCGa -3'
miRNA:   3'- cGCGGCUCcUGUCgUAGa-------GCAUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 86364 0.66 0.980315
Target:  5'- -aGCCGAGGcucuCGGCcacgucgggguagGUCUCGgcCUCa -3'
miRNA:   3'- cgCGGCUCCu---GUCG-------------UAGAGCauGAGc -5'
15857 3' -54.7 NC_004065.1 + 81374 0.66 0.978362
Target:  5'- cGCGCaCGAGcACGGCGUCcugcaggcaGUACUUGc -3'
miRNA:   3'- -CGCG-GCUCcUGUCGUAGag-------CAUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 80559 1.11 0.004752
Target:  5'- gGCGCCGAGGACAGCAUCUCGUACUCGa -3'
miRNA:   3'- -CGCGGCUCCUGUCGUAGAGCAUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 78153 0.67 0.964836
Target:  5'- -gGUCGAGG-CAGCG-CUUGUugUUGa -3'
miRNA:   3'- cgCGGCUCCuGUCGUaGAGCAugAGC- -5'
15857 3' -54.7 NC_004065.1 + 76521 0.68 0.946266
Target:  5'- uCGuuGAGGACGGCGg--CGUGUUCGc -3'
miRNA:   3'- cGCggCUCCUGUCGUagaGCAUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 75886 0.67 0.970815
Target:  5'- cGCGCagGAGGGCcuGGUA-CUCGgcCUCGu -3'
miRNA:   3'- -CGCGg-CUCCUG--UCGUaGAGCauGAGC- -5'
15857 3' -54.7 NC_004065.1 + 59331 0.68 0.944979
Target:  5'- cGCGCCGcGGGCGGCGUgcgauuuccagcucCgagugCGUGgUCGa -3'
miRNA:   3'- -CGCGGCuCCUGUCGUA--------------Ga----GCAUgAGC- -5'
15857 3' -54.7 NC_004065.1 + 59014 0.7 0.898852
Target:  5'- -gGCCaGGGuCGGCggUUCGUGCUCGc -3'
miRNA:   3'- cgCGGcUCCuGUCGuaGAGCAUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.