miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15857 3' -54.7 NC_004065.1 + 24236 0.76 0.598354
Target:  5'- cGCGCC-AGGACAGgAUgUCGUugUUGg -3'
miRNA:   3'- -CGCGGcUCCUGUCgUAgAGCAugAGC- -5'
15857 3' -54.7 NC_004065.1 + 227902 0.76 0.608289
Target:  5'- cGCuCCGAGGAUAGCGUUUC-UACUCc -3'
miRNA:   3'- -CGcGGCUCCUGUCGUAGAGcAUGAGc -5'
15857 3' -54.7 NC_004065.1 + 142791 0.73 0.72671
Target:  5'- gGCGCCGGGGGCGGcCAUCUuCGagaUCa -3'
miRNA:   3'- -CGCGGCUCCUGUC-GUAGA-GCaugAGc -5'
15857 3' -54.7 NC_004065.1 + 99938 0.72 0.782629
Target:  5'- gGCGCCGA--ACGGCAUCgcCGUAgUCGa -3'
miRNA:   3'- -CGCGGCUccUGUCGUAGa-GCAUgAGC- -5'
15857 3' -54.7 NC_004065.1 + 148837 0.72 0.782629
Target:  5'- cGCGuuGGGGAuCAGC-UCUCccgACUCGg -3'
miRNA:   3'- -CGCggCUCCU-GUCGuAGAGca-UGAGC- -5'
15857 3' -54.7 NC_004065.1 + 112854 0.72 0.799462
Target:  5'- uUGCCGucGGACAGCAgCUCGUccggcagACUCa -3'
miRNA:   3'- cGCGGCu-CCUGUCGUaGAGCA-------UGAGc -5'
15857 3' -54.7 NC_004065.1 + 116011 0.71 0.84194
Target:  5'- uGCGCCGcgGGGGCAGC-UCUC-UGC-CGa -3'
miRNA:   3'- -CGCGGC--UCCUGUCGuAGAGcAUGaGC- -5'
15857 3' -54.7 NC_004065.1 + 115068 0.71 0.849747
Target:  5'- cGCGCgCGAGGAC-GCGgcCUCGgucgGCUCu -3'
miRNA:   3'- -CGCG-GCUCCUGuCGUa-GAGCa---UGAGc -5'
15857 3' -54.7 NC_004065.1 + 59014 0.7 0.898852
Target:  5'- -gGCCaGGGuCGGCggUUCGUGCUCGc -3'
miRNA:   3'- cgCGGcUCCuGUCGuaGAGCAUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 167646 0.68 0.932492
Target:  5'- uCGUCGgcGGGACGGCcgUacCGUGCUCGg -3'
miRNA:   3'- cGCGGC--UCCUGUCGuaGa-GCAUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 178358 0.68 0.932492
Target:  5'- -gGuCUGaAGGGCAGguUCUUGUACUCc -3'
miRNA:   3'- cgC-GGC-UCCUGUCguAGAGCAUGAGc -5'
15857 3' -54.7 NC_004065.1 + 102293 0.69 0.916685
Target:  5'- uCGgaCGAGGACAGCGUCgagaggC-UGCUCGa -3'
miRNA:   3'- cGCg-GCUCCUGUCGUAGa-----GcAUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 223831 0.69 0.910964
Target:  5'- cUGUCgGAGGACgcgAGCGacaaCUCGUACUCGg -3'
miRNA:   3'- cGCGG-CUCCUG---UCGUa---GAGCAUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 130530 0.69 0.905019
Target:  5'- cGCGCCaGGGACcccaacggcGGCAUCUCGcACgUCu -3'
miRNA:   3'- -CGCGGcUCCUG---------UCGUAGAGCaUG-AGc -5'
15857 3' -54.7 NC_004065.1 + 200793 0.69 0.905019
Target:  5'- gGUGgCGGGcGACGGCGUCUCG-GCgCGg -3'
miRNA:   3'- -CGCgGCUC-CUGUCGUAGAGCaUGaGC- -5'
15857 3' -54.7 NC_004065.1 + 137880 0.7 0.898852
Target:  5'- aGCGUCGGGGugaucuuCAGCGcgCUCGUcUUCGg -3'
miRNA:   3'- -CGCGGCUCCu------GUCGUa-GAGCAuGAGC- -5'
15857 3' -54.7 NC_004065.1 + 179440 0.66 0.98252
Target:  5'- gGCGcCCGAaGACAGUAgg--GUGCUCGa -3'
miRNA:   3'- -CGC-GGCUcCUGUCGUagagCAUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 152054 0.8 0.395081
Target:  5'- uCGCCGcGGcCAGCGUCUCGggGCUCGa -3'
miRNA:   3'- cGCGGCuCCuGUCGUAGAGCa-UGAGC- -5'
15857 3' -54.7 NC_004065.1 + 155580 0.77 0.549159
Target:  5'- aCGCCGAGGACGGCGUgCUCGagGC-Ca -3'
miRNA:   3'- cGCGGCUCCUGUCGUA-GAGCa-UGaGc -5'
15857 3' -54.7 NC_004065.1 + 204767 0.73 0.763489
Target:  5'- -gGCCGGGGACAGCucuuacuAUCUCauagccgACUCGa -3'
miRNA:   3'- cgCGGCUCCUGUCG-------UAGAGca-----UGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.