Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15857 | 3' | -54.7 | NC_004065.1 | + | 78153 | 0.67 | 0.964836 |
Target: 5'- -gGUCGAGG-CAGCG-CUUGUugUUGa -3' miRNA: 3'- cgCGGCUCCuGUCGUaGAGCAugAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 114889 | 0.67 | 0.964836 |
Target: 5'- gGCGguuCCGAGGcCAuCAUCUCGgugGCUCc -3' miRNA: 3'- -CGC---GGCUCCuGUcGUAGAGCa--UGAGc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 177503 | 0.67 | 0.964836 |
Target: 5'- cCGCCGGGGGuCAGUAUCcCuUGcCUCGg -3' miRNA: 3'- cGCGGCUCCU-GUCGUAGaGcAU-GAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 174609 | 0.67 | 0.970815 |
Target: 5'- cGCGCCccGGACAGCccaucaggccgGUCUucUGUccGCUCGg -3' miRNA: 3'- -CGCGGcuCCUGUCG-----------UAGA--GCA--UGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 174260 | 0.67 | 0.970815 |
Target: 5'- gGCGCCGA-GACcGcCAUCUUccACUCGg -3' miRNA: 3'- -CGCGGCUcCUGuC-GUAGAGcaUGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 180966 | 0.66 | 0.973514 |
Target: 5'- uUGCCGGucagcuggccGGACGGgGUUUCGguccgGCUCGu -3' miRNA: 3'- cGCGGCU----------CCUGUCgUAGAGCa----UGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 138154 | 0.66 | 0.975785 |
Target: 5'- cCGCCGGGGGCuucacguauauaaAGguUCUgGUGCcgCGg -3' miRNA: 3'- cGCGGCUCCUG-------------UCguAGAgCAUGa-GC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 144078 | 0.68 | 0.941899 |
Target: 5'- cGCGUCGAGGACGGCGaugagaUCGgcgACg-- -3' miRNA: 3'- -CGCGGCUCCUGUCGUag----AGCa--UGagc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 130597 | 0.68 | 0.941899 |
Target: 5'- aUGUCGAGG-CGGCGUCUgccGCUCGg -3' miRNA: 3'- cGCGGCUCCuGUCGUAGAgcaUGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 186553 | 0.68 | 0.941899 |
Target: 5'- gGCGCCGAGGACA------CGUGCUgCGg -3' miRNA: 3'- -CGCGGCUCCUGUcguagaGCAUGA-GC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 152054 | 0.8 | 0.395081 |
Target: 5'- uCGCCGcGGcCAGCGUCUCGggGCUCGa -3' miRNA: 3'- cGCGGCuCCuGUCGUAGAGCa-UGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 155580 | 0.77 | 0.549159 |
Target: 5'- aCGCCGAGGACGGCGUgCUCGagGC-Ca -3' miRNA: 3'- cGCGGCUCCUGUCGUA-GAGCa-UGaGc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 204767 | 0.73 | 0.763489 |
Target: 5'- -gGCCGGGGACAGCucuuacuAUCUCauagccgACUCGa -3' miRNA: 3'- cgCGGCUCCUGUCG-------UAGAGca-----UGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 177221 | 0.72 | 0.79155 |
Target: 5'- uUGCCGAGGGCgGGCGcgCUC-UGCUCGc -3' miRNA: 3'- cGCGGCUCCUG-UCGUa-GAGcAUGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 123254 | 0.71 | 0.825791 |
Target: 5'- cGUGgCGAG-ACGGCAUUUCGUGCUa- -3' miRNA: 3'- -CGCgGCUCcUGUCGUAGAGCAUGAgc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 153307 | 0.71 | 0.84194 |
Target: 5'- cCGCCGAGGAguGCAacCUCGacgcGCUCu -3' miRNA: 3'- cGCGGCUCCUguCGUa-GAGCa---UGAGc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 155843 | 0.7 | 0.872022 |
Target: 5'- uGCGCUgGAGGGCGGuCAUCg---GCUCGa -3' miRNA: 3'- -CGCGG-CUCCUGUC-GUAGagcaUGAGC- -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 189088 | 0.7 | 0.878353 |
Target: 5'- gGgGCuCGAGGACcucgcccGGUGUCUCuGUGCUCa -3' miRNA: 3'- -CgCG-GCUCCUG-------UCGUAGAG-CAUGAGc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 196628 | 0.7 | 0.885862 |
Target: 5'- uGCGCCG-GGGCgAGCGcCUCGagagGCUCc -3' miRNA: 3'- -CGCGGCuCCUG-UCGUaGAGCa---UGAGc -5' |
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15857 | 3' | -54.7 | NC_004065.1 | + | 199921 | 0.69 | 0.905019 |
Target: 5'- cCGCCGGGGcuGCAGC-UCUCGcUAC-CGc -3' miRNA: 3'- cGCGGCUCC--UGUCGuAGAGC-AUGaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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