miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15857 3' -54.7 NC_004065.1 + 80559 1.11 0.004752
Target:  5'- gGCGCCGAGGACAGCAUCUCGUACUCGa -3'
miRNA:   3'- -CGCGGCUCCUGUCGUAGAGCAUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 179739 0.68 0.954337
Target:  5'- uCGCCGcgcGGACGGCGgUCUCGggGCcCGa -3'
miRNA:   3'- cGCGGCu--CCUGUCGU-AGAGCa-UGaGC- -5'
15857 3' -54.7 NC_004065.1 + 114889 0.67 0.964836
Target:  5'- gGCGguuCCGAGGcCAuCAUCUCGgugGCUCc -3'
miRNA:   3'- -CGC---GGCUCCuGUcGUAGAGCa--UGAGc -5'
15857 3' -54.7 NC_004065.1 + 179440 0.66 0.98252
Target:  5'- gGCGcCCGAaGACAGUAgg--GUGCUCGa -3'
miRNA:   3'- -CGC-GGCUcCUGUCGUagagCAUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 177221 0.72 0.79155
Target:  5'- uUGCCGAGGGCgGGCGcgCUC-UGCUCGc -3'
miRNA:   3'- cGCGGCUCCUG-UCGUa-GAGcAUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 123254 0.71 0.825791
Target:  5'- cGUGgCGAG-ACGGCAUUUCGUGCUa- -3'
miRNA:   3'- -CGCgGCUCcUGUCGUAGAGCAUGAgc -5'
15857 3' -54.7 NC_004065.1 + 155843 0.7 0.872022
Target:  5'- uGCGCUgGAGGGCGGuCAUCg---GCUCGa -3'
miRNA:   3'- -CGCGG-CUCCUGUC-GUAGagcaUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 189088 0.7 0.878353
Target:  5'- gGgGCuCGAGGACcucgcccGGUGUCUCuGUGCUCa -3'
miRNA:   3'- -CgCG-GCUCCUG-------UCGUAGAG-CAUGAGc -5'
15857 3' -54.7 NC_004065.1 + 186553 0.68 0.941899
Target:  5'- gGCGCCGAGGACA------CGUGCUgCGg -3'
miRNA:   3'- -CGCGGCUCCUGUcguagaGCAUGA-GC- -5'
15857 3' -54.7 NC_004065.1 + 13100 0.68 0.946265
Target:  5'- cGCGuCCGAGGACgaagucuuggAGCAUCUUcuuCUCu -3'
miRNA:   3'- -CGC-GGCUCCUG----------UCGUAGAGcauGAGc -5'
15857 3' -54.7 NC_004065.1 + 144078 0.68 0.941899
Target:  5'- cGCGUCGAGGACGGCGaugagaUCGgcgACg-- -3'
miRNA:   3'- -CGCGGCUCCUGUCGUag----AGCa--UGagc -5'
15857 3' -54.7 NC_004065.1 + 199921 0.69 0.905019
Target:  5'- cCGCCGGGGcuGCAGC-UCUCGcUAC-CGc -3'
miRNA:   3'- cGCGGCUCC--UGUCGuAGAGC-AUGaGC- -5'
15857 3' -54.7 NC_004065.1 + 152054 0.8 0.395081
Target:  5'- uCGCCGcGGcCAGCGUCUCGggGCUCGa -3'
miRNA:   3'- cGCGGCuCCuGUCGUAGAGCa-UGAGC- -5'
15857 3' -54.7 NC_004065.1 + 59331 0.68 0.944979
Target:  5'- cGCGCCGcGGGCGGCGUgcgauuuccagcucCgagugCGUGgUCGa -3'
miRNA:   3'- -CGCGGCuCCUGUCGUA--------------Ga----GCAUgAGC- -5'
15857 3' -54.7 NC_004065.1 + 155580 0.77 0.549159
Target:  5'- aCGCCGAGGACGGCGUgCUCGagGC-Ca -3'
miRNA:   3'- cGCGGCUCCUGUCGUA-GAGCa-UGaGc -5'
15857 3' -54.7 NC_004065.1 + 196628 0.7 0.885862
Target:  5'- uGCGCCG-GGGCgAGCGcCUCGagagGCUCc -3'
miRNA:   3'- -CGCGGCuCCUG-UCGUaGAGCa---UGAGc -5'
15857 3' -54.7 NC_004065.1 + 43795 0.68 0.946265
Target:  5'- -gGCCaGGGGCAGCAUCgcuccaUCGUGgUCc -3'
miRNA:   3'- cgCGGcUCCUGUCGUAG------AGCAUgAGc -5'
15857 3' -54.7 NC_004065.1 + 78153 0.67 0.964836
Target:  5'- -gGUCGAGG-CAGCG-CUUGUugUUGa -3'
miRNA:   3'- cgCGGCUCCuGUCGUaGAGCAugAGC- -5'
15857 3' -54.7 NC_004065.1 + 204767 0.73 0.763489
Target:  5'- -gGCCGGGGACAGCucuuacuAUCUCauagccgACUCGa -3'
miRNA:   3'- cgCGGCUCCUGUCG-------UAGAGca-----UGAGC- -5'
15857 3' -54.7 NC_004065.1 + 153307 0.71 0.84194
Target:  5'- cCGCCGAGGAguGCAacCUCGacgcGCUCu -3'
miRNA:   3'- cGCGGCUCCUguCGUa-GAGCa---UGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.