miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15857 3' -54.7 NC_004065.1 + 177503 0.67 0.964836
Target:  5'- cCGCCGGGGGuCAGUAUCcCuUGcCUCGg -3'
miRNA:   3'- cGCGGCUCCU-GUCGUAGaGcAU-GAGC- -5'
15857 3' -54.7 NC_004065.1 + 168726 0.66 0.976028
Target:  5'- -gGUCGAcGGgGGCGUCUCGUACa-- -3'
miRNA:   3'- cgCGGCUcCUgUCGUAGAGCAUGagc -5'
15857 3' -54.7 NC_004065.1 + 114889 0.67 0.964836
Target:  5'- gGCGguuCCGAGGcCAuCAUCUCGgugGCUCc -3'
miRNA:   3'- -CGC---GGCUCCuGUcGUAGAGCa--UGAGc -5'
15857 3' -54.7 NC_004065.1 + 155843 0.7 0.872022
Target:  5'- uGCGCUgGAGGGCGGuCAUCg---GCUCGa -3'
miRNA:   3'- -CGCGG-CUCCUGUC-GUAGagcaUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 151529 0.66 0.976028
Target:  5'- cGCuGCCGGccGGGCGGUGUCgggCGcGCUUGa -3'
miRNA:   3'- -CG-CGGCU--CCUGUCGUAGa--GCaUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 180966 0.66 0.973514
Target:  5'- uUGCCGGucagcuggccGGACGGgGUUUCGguccgGCUCGu -3'
miRNA:   3'- cGCGGCU----------CCUGUCgUAGAGCa----UGAGC- -5'
15857 3' -54.7 NC_004065.1 + 197120 0.66 0.979247
Target:  5'- uCGUCGccuccgacccccgacAGGACGGCAUCUCGgACg-- -3'
miRNA:   3'- cGCGGC---------------UCCUGUCGUAGAGCaUGagc -5'
15857 3' -54.7 NC_004065.1 + 179440 0.66 0.98252
Target:  5'- gGCGcCCGAaGACAGUAgg--GUGCUCGa -3'
miRNA:   3'- -CGC-GGCUcCUGUCGUagagCAUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 153307 0.71 0.84194
Target:  5'- cCGCCGAGGAguGCAacCUCGacgcGCUCu -3'
miRNA:   3'- cGCGGCUCCUguCGUa-GAGCa---UGAGc -5'
15857 3' -54.7 NC_004065.1 + 123254 0.71 0.825791
Target:  5'- cGUGgCGAG-ACGGCAUUUCGUGCUa- -3'
miRNA:   3'- -CGCgGCUCcUGUCGUAGAGCAUGAgc -5'
15857 3' -54.7 NC_004065.1 + 196628 0.7 0.885862
Target:  5'- uGCGCCG-GGGCgAGCGcCUCGagagGCUCc -3'
miRNA:   3'- -CGCGGCuCCUG-UCGUaGAGCa---UGAGc -5'
15857 3' -54.7 NC_004065.1 + 189088 0.7 0.878353
Target:  5'- gGgGCuCGAGGACcucgcccGGUGUCUCuGUGCUCa -3'
miRNA:   3'- -CgCG-GCUCCUG-------UCGUAGAG-CAUGAGc -5'
15857 3' -54.7 NC_004065.1 + 112854 0.72 0.799462
Target:  5'- uUGCCGucGGACAGCAgCUCGUccggcagACUCa -3'
miRNA:   3'- cGCGGCu-CCUGUCGUaGAGCA-------UGAGc -5'
15857 3' -54.7 NC_004065.1 + 141206 0.66 0.976028
Target:  5'- cGCGCCGAcGACAgGCAgaUCgcgCGUGCg-- -3'
miRNA:   3'- -CGCGGCUcCUGU-CGU--AGa--GCAUGagc -5'
15857 3' -54.7 NC_004065.1 + 223136 0.66 0.976028
Target:  5'- cGCGUagaUGAGGGCgAGCAUCcCGgcCUUGa -3'
miRNA:   3'- -CGCG---GCUCCUG-UCGUAGaGCauGAGC- -5'
15857 3' -54.7 NC_004065.1 + 92016 0.66 0.973514
Target:  5'- uGCGCCgcaaucgcaGAGGACcGCGggcUCUUGgcgcGCUCGa -3'
miRNA:   3'- -CGCGG---------CUCCUGuCGU---AGAGCa---UGAGC- -5'
15857 3' -54.7 NC_004065.1 + 91127 0.67 0.970815
Target:  5'- uCGCUGAGcGCGGgGUCguagaaccCGUGCUCGa -3'
miRNA:   3'- cGCGGCUCcUGUCgUAGa-------GCAUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 75886 0.67 0.970815
Target:  5'- cGCGCagGAGGGCcuGGUA-CUCGgcCUCGu -3'
miRNA:   3'- -CGCGg-CUCCUG--UCGUaGAGCauGAGC- -5'
15857 3' -54.7 NC_004065.1 + 223831 0.69 0.910964
Target:  5'- cUGUCgGAGGACgcgAGCGacaaCUCGUACUCGg -3'
miRNA:   3'- cGCGG-CUCCUG---UCGUa---GAGCAUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 102293 0.69 0.916685
Target:  5'- uCGgaCGAGGACAGCGUCgagaggC-UGCUCGa -3'
miRNA:   3'- cGCg-GCUCCUGUCGUAGa-----GcAUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.