miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15857 3' -54.7 NC_004065.1 + 112854 0.72 0.799462
Target:  5'- uUGCCGucGGACAGCAgCUCGUccggcagACUCa -3'
miRNA:   3'- cGCGGCu-CCUGUCGUaGAGCA-------UGAGc -5'
15857 3' -54.7 NC_004065.1 + 227902 0.76 0.608289
Target:  5'- cGCuCCGAGGAUAGCGUUUC-UACUCc -3'
miRNA:   3'- -CGcGGCUCCUGUCGUAGAGcAUGAGc -5'
15857 3' -54.7 NC_004065.1 + 148837 0.72 0.782629
Target:  5'- cGCGuuGGGGAuCAGC-UCUCccgACUCGg -3'
miRNA:   3'- -CGCggCUCCU-GUCGuAGAGca-UGAGC- -5'
15857 3' -54.7 NC_004065.1 + 99938 0.72 0.782629
Target:  5'- gGCGCCGA--ACGGCAUCgcCGUAgUCGa -3'
miRNA:   3'- -CGCGGCUccUGUCGUAGa-GCAUgAGC- -5'
15857 3' -54.7 NC_004065.1 + 167646 0.68 0.932492
Target:  5'- uCGUCGgcGGGACGGCcgUacCGUGCUCGg -3'
miRNA:   3'- cGCGGC--UCCUGUCGuaGa-GCAUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 92016 0.66 0.973514
Target:  5'- uGCGCCgcaaucgcaGAGGACcGCGggcUCUUGgcgcGCUCGa -3'
miRNA:   3'- -CGCGG---------CUCCUGuCGU---AGAGCa---UGAGC- -5'
15857 3' -54.7 NC_004065.1 + 223136 0.66 0.976028
Target:  5'- cGCGUagaUGAGGGCgAGCAUCcCGgcCUUGa -3'
miRNA:   3'- -CGCG---GCUCCUG-UCGUAGaGCauGAGC- -5'
15857 3' -54.7 NC_004065.1 + 141206 0.66 0.976028
Target:  5'- cGCGCCGAcGACAgGCAgaUCgcgCGUGCg-- -3'
miRNA:   3'- -CGCGGCUcCUGU-CGU--AGa--GCAUGagc -5'
15857 3' -54.7 NC_004065.1 + 75886 0.67 0.970815
Target:  5'- cGCGCagGAGGGCcuGGUA-CUCGgcCUCGu -3'
miRNA:   3'- -CGCGg-CUCCUG--UCGUaGAGCauGAGC- -5'
15857 3' -54.7 NC_004065.1 + 132460 0.67 0.969969
Target:  5'- gGCGCCGAGGuCAGCuUCgUCaggaagcaggugcuGUcGCUCGu -3'
miRNA:   3'- -CGCGGCUCCuGUCGuAG-AG--------------CA-UGAGC- -5'
15857 3' -54.7 NC_004065.1 + 24922 0.66 0.980524
Target:  5'- gGCGCCauaucGAGcgaucGACAGCGUUUuCGaGCUCGa -3'
miRNA:   3'- -CGCGG-----CUC-----CUGUCGUAGA-GCaUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 32790 0.66 0.980524
Target:  5'- uGCGCuCGAGGGC-----CUCGUugUCGu -3'
miRNA:   3'- -CGCG-GCUCCUGucguaGAGCAugAGC- -5'
15857 3' -54.7 NC_004065.1 + 109196 0.66 0.98252
Target:  5'- -gGCCGGcGGCGGCGcCUCGgccucuuccUGCUCGg -3'
miRNA:   3'- cgCGGCUcCUGUCGUaGAGC---------AUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 200342 0.67 0.964837
Target:  5'- gGCGCCGAGGcuCAGCAaccugC-CGgACUCu -3'
miRNA:   3'- -CGCGGCUCCu-GUCGUa----GaGCaUGAGc -5'
15857 3' -54.7 NC_004065.1 + 191465 0.67 0.966714
Target:  5'- aCGCCGAGGugcggcaccaccacGCAcGCGuguccccccagguUCUCGUGcCUCGg -3'
miRNA:   3'- cGCGGCUCC--------------UGU-CGU-------------AGAGCAU-GAGC- -5'
15857 3' -54.7 NC_004065.1 + 45998 0.67 0.961546
Target:  5'- gGCGCCGuGG-CGGCGUUga--ACUCGg -3'
miRNA:   3'- -CGCGGCuCCuGUCGUAGagcaUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 124483 0.67 0.960518
Target:  5'- uGCGCCGGguccagggccgcgcGGAucucCAGCAUCUgcgCGUuCUCGg -3'
miRNA:   3'- -CGCGGCU--------------CCU----GUCGUAGA---GCAuGAGC- -5'
15857 3' -54.7 NC_004065.1 + 186583 0.68 0.954337
Target:  5'- --aCCGAGGACGGCGgcgCUcCGUACg-- -3'
miRNA:   3'- cgcGGCUCCUGUCGUa--GA-GCAUGagc -5'
15857 3' -54.7 NC_004065.1 + 27701 0.68 0.954337
Target:  5'- uGCGUa-GGGAUcgGGCGUCUggccCGUGCUCGc -3'
miRNA:   3'- -CGCGgcUCCUG--UCGUAGA----GCAUGAGC- -5'
15857 3' -54.7 NC_004065.1 + 76521 0.68 0.946266
Target:  5'- uCGuuGAGGACGGCGg--CGUGUUCGc -3'
miRNA:   3'- cGCggCUCCUGUCGUagaGCAUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.