miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15857 5' -59 NC_004065.1 + 118245 0.66 0.86677
Target:  5'- cGUCGAcgGaCGCGUGgaGCUCgCCGgcggCCUc -3'
miRNA:   3'- -UAGCU--C-GCGCACgaCGAG-GGCaa--GGA- -5'
15857 5' -59 NC_004065.1 + 142688 0.66 0.86677
Target:  5'- -gUGAGCGauaucggGCUGCUCCUGgaCCg -3'
miRNA:   3'- uaGCUCGCgca----CGACGAGGGCaaGGa -5'
15857 5' -59 NC_004065.1 + 127362 0.66 0.859465
Target:  5'- cAUCugcuGGUGC-UGCUGCUUuuGUUCCUc -3'
miRNA:   3'- -UAGc---UCGCGcACGACGAGggCAAGGA- -5'
15857 5' -59 NC_004065.1 + 133435 0.66 0.851969
Target:  5'- uUCGGGCGCGU-CgGC-CUCGUUCUg -3'
miRNA:   3'- uAGCUCGCGCAcGaCGaGGGCAAGGa -5'
15857 5' -59 NC_004065.1 + 32801 0.66 0.844287
Target:  5'- cAUCGuuucucCGCGUGaUGCUCgCGUUCCg -3'
miRNA:   3'- -UAGCuc----GCGCACgACGAGgGCAAGGa -5'
15857 5' -59 NC_004065.1 + 58544 0.67 0.820192
Target:  5'- -gCGcuCGCGUGCUGCgUCCGUccgUCCg -3'
miRNA:   3'- uaGCucGCGCACGACGaGGGCA---AGGa -5'
15857 5' -59 NC_004065.1 + 94636 0.67 0.803321
Target:  5'- gGUCGGGCGCGgccgGC-GCgUCaCCGUcCCUg -3'
miRNA:   3'- -UAGCUCGCGCa---CGaCG-AG-GGCAaGGA- -5'
15857 5' -59 NC_004065.1 + 77689 0.67 0.776954
Target:  5'- gAUCGAGCcgaGCGUGg-GC-CCCGUguUCCUg -3'
miRNA:   3'- -UAGCUCG---CGCACgaCGaGGGCA--AGGA- -5'
15857 5' -59 NC_004065.1 + 75068 0.68 0.767913
Target:  5'- cUCGAG-GCG-GCUGCUCaugCCGcUCCUg -3'
miRNA:   3'- uAGCUCgCGCaCGACGAG---GGCaAGGA- -5'
15857 5' -59 NC_004065.1 + 112582 0.68 0.767002
Target:  5'- -aUGGGCgGCGUGCUGCgucgcaacgugCCCGUgaaggucagguagUCCUg -3'
miRNA:   3'- uaGCUCG-CGCACGACGa----------GGGCA-------------AGGA- -5'
15857 5' -59 NC_004065.1 + 103443 0.69 0.701938
Target:  5'- gAUCGAcaccuuccuGCGCGUGCUGCUgcgccacgcgccCCCGUgcUUCg -3'
miRNA:   3'- -UAGCU---------CGCGCACGACGA------------GGGCA--AGGa -5'
15857 5' -59 NC_004065.1 + 131147 0.72 0.545179
Target:  5'- -aCGAGCGCGUGg-GCgacgacgaccCCCGUUCCg -3'
miRNA:   3'- uaGCUCGCGCACgaCGa---------GGGCAAGGa -5'
15857 5' -59 NC_004065.1 + 80594 1.05 0.003974
Target:  5'- gAUCGAGCGCGUGCUGCUCCCGUUCCUc -3'
miRNA:   3'- -UAGCUCGCGCACGACGAGGGCAAGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.