Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15857 | 5' | -59 | NC_004065.1 | + | 118245 | 0.66 | 0.86677 |
Target: 5'- cGUCGAcgGaCGCGUGgaGCUCgCCGgcggCCUc -3' miRNA: 3'- -UAGCU--C-GCGCACgaCGAG-GGCaa--GGA- -5' |
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15857 | 5' | -59 | NC_004065.1 | + | 127362 | 0.66 | 0.859465 |
Target: 5'- cAUCugcuGGUGC-UGCUGCUUuuGUUCCUc -3' miRNA: 3'- -UAGc---UCGCGcACGACGAGggCAAGGA- -5' |
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15857 | 5' | -59 | NC_004065.1 | + | 32801 | 0.66 | 0.844287 |
Target: 5'- cAUCGuuucucCGCGUGaUGCUCgCGUUCCg -3' miRNA: 3'- -UAGCuc----GCGCACgACGAGgGCAAGGa -5' |
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15857 | 5' | -59 | NC_004065.1 | + | 58544 | 0.67 | 0.820192 |
Target: 5'- -gCGcuCGCGUGCUGCgUCCGUccgUCCg -3' miRNA: 3'- uaGCucGCGCACGACGaGGGCA---AGGa -5' |
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15857 | 5' | -59 | NC_004065.1 | + | 94636 | 0.67 | 0.803321 |
Target: 5'- gGUCGGGCGCGgccgGC-GCgUCaCCGUcCCUg -3' miRNA: 3'- -UAGCUCGCGCa---CGaCG-AG-GGCAaGGA- -5' |
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15857 | 5' | -59 | NC_004065.1 | + | 103443 | 0.69 | 0.701938 |
Target: 5'- gAUCGAcaccuuccuGCGCGUGCUGCUgcgccacgcgccCCCGUgcUUCg -3' miRNA: 3'- -UAGCU---------CGCGCACGACGA------------GGGCA--AGGa -5' |
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15857 | 5' | -59 | NC_004065.1 | + | 131147 | 0.72 | 0.545179 |
Target: 5'- -aCGAGCGCGUGg-GCgacgacgaccCCCGUUCCg -3' miRNA: 3'- uaGCUCGCGCACgaCGa---------GGGCAAGGa -5' |
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15857 | 5' | -59 | NC_004065.1 | + | 80594 | 1.05 | 0.003974 |
Target: 5'- gAUCGAGCGCGUGCUGCUCCCGUUCCUc -3' miRNA: 3'- -UAGCUCGCGCACGACGAGGGCAAGGA- -5' |
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15857 | 5' | -59 | NC_004065.1 | + | 142688 | 0.66 | 0.86677 |
Target: 5'- -gUGAGCGauaucggGCUGCUCCUGgaCCg -3' miRNA: 3'- uaGCUCGCgca----CGACGAGGGCaaGGa -5' |
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15857 | 5' | -59 | NC_004065.1 | + | 133435 | 0.66 | 0.851969 |
Target: 5'- uUCGGGCGCGU-CgGC-CUCGUUCUg -3' miRNA: 3'- uAGCUCGCGCAcGaCGaGGGCAAGGa -5' |
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15857 | 5' | -59 | NC_004065.1 | + | 77689 | 0.67 | 0.776954 |
Target: 5'- gAUCGAGCcgaGCGUGg-GC-CCCGUguUCCUg -3' miRNA: 3'- -UAGCUCG---CGCACgaCGaGGGCA--AGGA- -5' |
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15857 | 5' | -59 | NC_004065.1 | + | 75068 | 0.68 | 0.767913 |
Target: 5'- cUCGAG-GCG-GCUGCUCaugCCGcUCCUg -3' miRNA: 3'- uAGCUCgCGCaCGACGAG---GGCaAGGA- -5' |
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15857 | 5' | -59 | NC_004065.1 | + | 112582 | 0.68 | 0.767002 |
Target: 5'- -aUGGGCgGCGUGCUGCgucgcaacgugCCCGUgaaggucagguagUCCUg -3' miRNA: 3'- uaGCUCG-CGCACGACGa----------GGGCA-------------AGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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