miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15858 3' -58.1 NC_004065.1 + 98254 0.66 0.914193
Target:  5'- aCGGCUcgggacgGCGG-CCCUGGGCGCGcGcCu -3'
miRNA:   3'- aGCUGGa------CGUCuGGGACCUGUGC-CaG- -5'
15858 3' -58.1 NC_004065.1 + 68123 0.66 0.914193
Target:  5'- uUCGAgagccugaugggUCUGuCGGACgagCUGGACGCGGUg -3'
miRNA:   3'- -AGCU------------GGAC-GUCUGg--GACCUGUGCCAg -5'
15858 3' -58.1 NC_004065.1 + 207993 0.66 0.914193
Target:  5'- gCGGCCUGCccgGGGCCgUGGcCG-GGUUa -3'
miRNA:   3'- aGCUGGACG---UCUGGgACCuGUgCCAG- -5'
15858 3' -58.1 NC_004065.1 + 140119 0.66 0.914193
Target:  5'- -gGACgUGCGGAggUCC-GGGCACGGg- -3'
miRNA:   3'- agCUGgACGUCU--GGGaCCUGUGCCag -5'
15858 3' -58.1 NC_004065.1 + 104106 0.66 0.90846
Target:  5'- gUCGGCCUGCAcGugCCgagcGGccgggccuacaGCACGG-Cg -3'
miRNA:   3'- -AGCUGGACGU-CugGGa---CC-----------UGUGCCaG- -5'
15858 3' -58.1 NC_004065.1 + 147489 0.66 0.90846
Target:  5'- gUGGCCgucCAGcCCCUGGACGgGGcCc -3'
miRNA:   3'- aGCUGGac-GUCuGGGACCUGUgCCaG- -5'
15858 3' -58.1 NC_004065.1 + 98459 0.66 0.90251
Target:  5'- aCGACCUGguGgucGCCCUGauCAUGGcCg -3'
miRNA:   3'- aGCUGGACguC---UGGGACcuGUGCCaG- -5'
15858 3' -58.1 NC_004065.1 + 128044 0.66 0.898837
Target:  5'- cUCGAgCUGCAGaaGCUCUGGcucaACgucuccuaccguaauGCGGUCa -3'
miRNA:   3'- -AGCUgGACGUC--UGGGACC----UG---------------UGCCAG- -5'
15858 3' -58.1 NC_004065.1 + 195793 0.66 0.896346
Target:  5'- -gGACC-GCGGGCCCUGcGCugaAgGGUCg -3'
miRNA:   3'- agCUGGaCGUCUGGGACcUG---UgCCAG- -5'
15858 3' -58.1 NC_004065.1 + 37627 0.66 0.889969
Target:  5'- aCGGCUcaCAGGCCaccgucCUGGACACGGcCg -3'
miRNA:   3'- aGCUGGacGUCUGG------GACCUGUGCCaG- -5'
15858 3' -58.1 NC_004065.1 + 121571 0.66 0.889969
Target:  5'- gCG-CCUGCGGACUCagccGGAUccCGGUCu -3'
miRNA:   3'- aGCuGGACGUCUGGGa---CCUGu-GCCAG- -5'
15858 3' -58.1 NC_004065.1 + 195573 0.66 0.889969
Target:  5'- -aGACCUGCGuGCCCacgcucgGGugACGGc- -3'
miRNA:   3'- agCUGGACGUcUGGGa------CCugUGCCag -5'
15858 3' -58.1 NC_004065.1 + 55415 0.66 0.883384
Target:  5'- cCGGCCUGaUGGGCuguCCgGGGCGCgGGUCu -3'
miRNA:   3'- aGCUGGAC-GUCUG---GGaCCUGUG-CCAG- -5'
15858 3' -58.1 NC_004065.1 + 136722 0.66 0.883384
Target:  5'- aUGACCauaggucaGCuGACCaaaaUGGGCGCGGUUu -3'
miRNA:   3'- aGCUGGa-------CGuCUGGg---ACCUGUGCCAG- -5'
15858 3' -58.1 NC_004065.1 + 155388 0.67 0.876594
Target:  5'- -gGACCU-CAGACCCggguagcGGugGCGG-Cg -3'
miRNA:   3'- agCUGGAcGUCUGGGa------CCugUGCCaG- -5'
15858 3' -58.1 NC_004065.1 + 31809 0.67 0.876594
Target:  5'- -aGGCCgGgGGGCCUgccGGACGCGGa- -3'
miRNA:   3'- agCUGGaCgUCUGGGa--CCUGUGCCag -5'
15858 3' -58.1 NC_004065.1 + 209867 0.67 0.876594
Target:  5'- gUCcGCCgcaugGCuGACaCUGGGCACGGUa -3'
miRNA:   3'- -AGcUGGa----CGuCUGgGACCUGUGCCAg -5'
15858 3' -58.1 NC_004065.1 + 34418 0.67 0.876594
Target:  5'- uUCGGCCUGCcauuGGACUCcacGGaucGCACGGcCg -3'
miRNA:   3'- -AGCUGGACG----UCUGGGa--CC---UGUGCCaG- -5'
15858 3' -58.1 NC_004065.1 + 174462 0.67 0.869603
Target:  5'- -gGACCgucuacuacGUcGACCCgGGGCACGGUa -3'
miRNA:   3'- agCUGGa--------CGuCUGGGaCCUGUGCCAg -5'
15858 3' -58.1 NC_004065.1 + 30020 0.67 0.869603
Target:  5'- aCGACC-GCGGugCCcgucaagcUGGugGCGGa- -3'
miRNA:   3'- aGCUGGaCGUCugGG--------ACCugUGCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.