miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15858 5' -64.2 NC_004065.1 + 21978 0.66 0.684893
Target:  5'- aGGaCG-GUG-AGGGCCgccacggccacGCCGACGGUc -3'
miRNA:   3'- gCC-GCgCACgUCCCGGa----------CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 96037 0.66 0.684893
Target:  5'- gCGuGCGUGgGCAcGGGCCccggccGCCGAUauaGGCu -3'
miRNA:   3'- -GC-CGCGCaCGU-CCCGGa-----CGGCUG---CCG- -5'
15858 5' -64.2 NC_004065.1 + 19679 0.66 0.684893
Target:  5'- uGGCGUaUGCcGGGCCggGUa-ACGGCu -3'
miRNA:   3'- gCCGCGcACGuCCCGGa-CGgcUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 41268 0.66 0.683962
Target:  5'- gCGGuCGCGaucgcccUGguGGGCUUcGCCGcCGuGCg -3'
miRNA:   3'- -GCC-GCGC-------ACguCCCGGA-CGGCuGC-CG- -5'
15858 5' -64.2 NC_004065.1 + 174408 0.66 0.683962
Target:  5'- aGGCguGCGUGUccGGGGUCUgggugaacgcGCCcauccucguguccGACGGCg -3'
miRNA:   3'- gCCG--CGCACG--UCCCGGA----------CGG-------------CUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 198912 0.66 0.675567
Target:  5'- aCGGUGac-GguGGuGCCUGCCcgcuccacccuGGCGGCc -3'
miRNA:   3'- -GCCGCgcaCguCC-CGGACGG-----------CUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 50851 0.66 0.675567
Target:  5'- aCGcCGgGcGCGGGGCCU-CUGACGGa -3'
miRNA:   3'- -GCcGCgCaCGUCCCGGAcGGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 202230 0.66 0.675567
Target:  5'- gGGCGaCGUcuGCuGGGGCaggagGCCcuccaGACGGCg -3'
miRNA:   3'- gCCGC-GCA--CG-UCCCGga---CGG-----CUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 167528 0.66 0.675567
Target:  5'- aCGGCuGUGguaGCGGGGUCcuuggUGgUGAUGGCg -3'
miRNA:   3'- -GCCG-CGCa--CGUCCCGG-----ACgGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 68550 0.66 0.675567
Target:  5'- uGGaCGCGaucucgaaGCuGGGCCUGgCGagcaacGCGGCg -3'
miRNA:   3'- gCC-GCGCa-------CGuCCCGGACgGC------UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 32884 0.66 0.66621
Target:  5'- aGGCGCGccgGCgAGcGUCUGCCGcugGGCa -3'
miRNA:   3'- gCCGCGCa--CG-UCcCGGACGGCug-CCG- -5'
15858 5' -64.2 NC_004065.1 + 204472 0.66 0.66621
Target:  5'- aGGCGCG----GGGCCgacGCCGACGcCg -3'
miRNA:   3'- gCCGCGCacguCCCGGa--CGGCUGCcG- -5'
15858 5' -64.2 NC_004065.1 + 69391 0.66 0.66621
Target:  5'- aCGGCGCuG-GCGGaacagCUGCCGACGGg -3'
miRNA:   3'- -GCCGCG-CaCGUCccg--GACGGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 126272 0.66 0.66621
Target:  5'- -aGCGCGUucaGCAGcGCCUGCaCcACGGUg -3'
miRNA:   3'- gcCGCGCA---CGUCcCGGACG-GcUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 67005 0.66 0.66621
Target:  5'- uCGGCGCccGUGUAcGGGCCccgcGCgGGCaGCc -3'
miRNA:   3'- -GCCGCG--CACGU-CCCGGa---CGgCUGcCG- -5'
15858 5' -64.2 NC_004065.1 + 48116 0.66 0.656831
Target:  5'- uGGCgGCGgcGguGGGaCCucgcgcacguUGCCGACGuGCg -3'
miRNA:   3'- gCCG-CGCa-CguCCC-GG----------ACGGCUGC-CG- -5'
15858 5' -64.2 NC_004065.1 + 138823 0.66 0.656831
Target:  5'- gCGGCGcCGaUGCcGcGCaC-GCCGACGGCg -3'
miRNA:   3'- -GCCGC-GC-ACGuCcCG-GaCGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 130128 0.66 0.651194
Target:  5'- uCGGCGCaaGCuGGGCCUGagggugaucaucCCuuuccccccucgcacGGCGGCg -3'
miRNA:   3'- -GCCGCGcaCGuCCCGGAC------------GG---------------CUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 146595 0.66 0.647434
Target:  5'- uCGGgGUGgccauCGGGGCC-GUCGGCGGg -3'
miRNA:   3'- -GCCgCGCac---GUCCCGGaCGGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 168029 0.66 0.641791
Target:  5'- cCGGUucuGUGUucGCGGGGgCUGCUGgugcugcuccugguuGCGGCg -3'
miRNA:   3'- -GCCG---CGCA--CGUCCCgGACGGC---------------UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.