miRNA display CGI


Results 41 - 60 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15858 5' -64.2 NC_004065.1 + 118499 0.67 0.600422
Target:  5'- -uGCuGCG-GUGGGGCCUGUCGcucggguuCGGCa -3'
miRNA:   3'- gcCG-CGCaCGUCCCGGACGGCu-------GCCG- -5'
15858 5' -64.2 NC_004065.1 + 56619 0.67 0.600422
Target:  5'- gCGGcCGCGgauguggaUGCGGuGGCagcgGCCG-CGGCa -3'
miRNA:   3'- -GCC-GCGC--------ACGUC-CCGga--CGGCuGCCG- -5'
15858 5' -64.2 NC_004065.1 + 79283 0.67 0.613567
Target:  5'- aCGGCaucaGCGUggGCGagcugucgacggccuGGGCCUcccaCCGGCGGCg -3'
miRNA:   3'- -GCCG----CGCA--CGU---------------CCCGGAc---GGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 120492 0.67 0.619208
Target:  5'- aCGGUGuCGUGCccGGGGuagacggugaCCUGCuCcACGGCg -3'
miRNA:   3'- -GCCGC-GCACG--UCCC----------GGACG-GcUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 105560 0.67 0.619208
Target:  5'- cCGGCGCagcgGCAcGGCgC-GCCGuCGGCg -3'
miRNA:   3'- -GCCGCGca--CGUcCCG-GaCGGCuGCCG- -5'
15858 5' -64.2 NC_004065.1 + 206573 0.67 0.59761
Target:  5'- -uGCGUGUGCacgauGGGGCCucggUcaagcggggggaugGCCGACGGUa -3'
miRNA:   3'- gcCGCGCACG-----UCCCGG----A--------------CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 82522 0.67 0.609809
Target:  5'- uGuuGuCGUGCAGGGCCccguccagggGCUGgACGGCc -3'
miRNA:   3'- gCcgC-GCACGUCCCGGa---------CGGC-UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 141607 0.67 0.591056
Target:  5'- aCGGCG---GC-GGGCuccgCUGCCGGCGGUg -3'
miRNA:   3'- -GCCGCgcaCGuCCCG----GACGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 208041 0.67 0.581715
Target:  5'- uCGGCGUGgccGUGGcGGCCcucaccguccUGCCGAcgaCGGCc -3'
miRNA:   3'- -GCCGCGCa--CGUC-CCGG----------ACGGCU---GCCG- -5'
15858 5' -64.2 NC_004065.1 + 189106 0.67 0.609809
Target:  5'- cCGGUGUcucuGUGCucAGGGCCcggacaaGCCGGCGcGUg -3'
miRNA:   3'- -GCCGCG----CACG--UCCCGGa------CGGCUGC-CG- -5'
15858 5' -64.2 NC_004065.1 + 64297 0.67 0.588251
Target:  5'- gCGGCGCGcGUcucggacauccaacAGGGUCUGCUGGacuCGGa -3'
miRNA:   3'- -GCCGCGCaCG--------------UCCCGGACGGCU---GCCg -5'
15858 5' -64.2 NC_004065.1 + 127619 0.67 0.581715
Target:  5'- cCGGCGCucuacGUGCAccgcucGCgCUGCCGcuGCGGCg -3'
miRNA:   3'- -GCCGCG-----CACGUcc----CG-GACGGC--UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 108803 0.67 0.609809
Target:  5'- uGGCGUG-GCGGccguucagccgcGGCaacagGCUGACGGCc -3'
miRNA:   3'- gCCGCGCaCGUC------------CCGga---CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 76737 0.67 0.572405
Target:  5'- uCGGCGgGgac-GGGCgCggcGCCGGCGGCc -3'
miRNA:   3'- -GCCGCgCacguCCCG-Ga--CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 149923 0.67 0.609809
Target:  5'- gGGCGCGcggcucgGCAggaggcGGGCUUGauccacaGACGGCg -3'
miRNA:   3'- gCCGCGCa------CGU------CCCGGACgg-----CUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 19841 0.68 0.53557
Target:  5'- gCGGCG-GUGUcGGGacgaagCUGCCGaAUGGCg -3'
miRNA:   3'- -GCCGCgCACGuCCCg-----GACGGC-UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 102023 0.68 0.534659
Target:  5'- uGGCGCG-GC-GGGCCaccucggUGaCCcGCGGCg -3'
miRNA:   3'- gCCGCGCaCGuCCCGG-------AC-GGcUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 78656 0.68 0.53557
Target:  5'- uCGGcCGCcagcGCAGcGGCCggcGCCG-CGGCg -3'
miRNA:   3'- -GCC-GCGca--CGUC-CCGGa--CGGCuGCCG- -5'
15858 5' -64.2 NC_004065.1 + 151359 0.68 0.53557
Target:  5'- gGGCGCc-GCGGcgccGGCCgcugcGCUGGCGGCc -3'
miRNA:   3'- gCCGCGcaCGUC----CCGGa----CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 200785 0.68 0.53557
Target:  5'- -cGCGCG-GCGGuGGCg-GgCGACGGCg -3'
miRNA:   3'- gcCGCGCaCGUC-CCGgaCgGCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.