Results 61 - 80 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15858 | 5' | -64.2 | NC_004065.1 | + | 118250 | 0.68 | 0.544709 |
Target: 5'- aCGGaCGCGUGgA--GCUcGCCGGCGGCc -3' miRNA: 3'- -GCC-GCGCACgUccCGGaCGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 83420 | 0.68 | 0.553897 |
Target: 5'- aCGGCGUc--CAGGGU--GUCGACGGCg -3' miRNA: 3'- -GCCGCGcacGUCCCGgaCGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 200785 | 0.68 | 0.53557 |
Target: 5'- -cGCGCG-GCGGuGGCg-GgCGACGGCg -3' miRNA: 3'- gcCGCGCaCGUC-CCGgaCgGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 130180 | 0.68 | 0.525581 |
Target: 5'- cCGGCGCcaucugGUGCgacGGGGCCgUGCucaugagCGACGGg -3' miRNA: 3'- -GCCGCG------CACG---UCCCGG-ACG-------GCUGCCg -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 66129 | 0.68 | 0.563131 |
Target: 5'- aGGCGCuGgcgcGCuGGGCC-GCgGAcCGGCg -3' miRNA: 3'- gCCGCG-Ca---CGuCCCGGaCGgCU-GCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 121478 | 0.68 | 0.553897 |
Target: 5'- uCGGCGCGUccGC-GGGCgUGaaGGUGGCg -3' miRNA: 3'- -GCCGCGCA--CGuCCCGgACggCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 106610 | 0.68 | 0.553897 |
Target: 5'- aCGGUGCGccgacuccauCAGGGcCCUGaCCGAUGGa -3' miRNA: 3'- -GCCGCGCac--------GUCCC-GGAC-GGCUGCCg -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 120565 | 0.68 | 0.544709 |
Target: 5'- uCGGCGCGagcggGCGGGaCCUccggcGCCGGucuCGGCc -3' miRNA: 3'- -GCCGCGCa----CGUCCcGGA-----CGGCU---GCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 103755 | 0.68 | 0.544709 |
Target: 5'- -cGCGCG-GCGGGGCCUccgGaCCGuCGcGCa -3' miRNA: 3'- gcCGCGCaCGUCCCGGA---C-GGCuGC-CG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 78656 | 0.68 | 0.53557 |
Target: 5'- uCGGcCGCcagcGCAGcGGCCggcGCCG-CGGCg -3' miRNA: 3'- -GCC-GCGca--CGUC-CCGGa--CGGCuGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 19841 | 0.68 | 0.53557 |
Target: 5'- gCGGCG-GUGUcGGGacgaagCUGCCGaAUGGCg -3' miRNA: 3'- -GCCGCgCACGuCCCg-----GACGGC-UGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 63489 | 0.68 | 0.532839 |
Target: 5'- aGGCGCcgucgcgcagccagGUGCGGauGGCCUcGCCcucGCGGCc -3' miRNA: 3'- gCCGCG--------------CACGUC--CCGGA-CGGc--UGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 90525 | 0.68 | 0.526486 |
Target: 5'- aGGUG-GUGCGGGGaguacuucucguCCcGcCCGACGGCc -3' miRNA: 3'- gCCGCgCACGUCCC------------GGaC-GGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 166514 | 0.68 | 0.525581 |
Target: 5'- aCGGcCGCGaggGCGaGGCCauccgcaccuggcUGCgCGACGGCg -3' miRNA: 3'- -GCC-GCGCa--CGUcCCGG-------------ACG-GCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 108666 | 0.69 | 0.508497 |
Target: 5'- uGGCGCccGUGCGGauGGaCCUGCUGuGCGuGCa -3' miRNA: 3'- gCCGCG--CACGUC--CC-GGACGGC-UGC-CG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 65315 | 0.69 | 0.473341 |
Target: 5'- --cCGCGUGguGGGaCCgGCggCGGCGGCg -3' miRNA: 3'- gccGCGCACguCCC-GGaCG--GCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 124957 | 0.69 | 0.473341 |
Target: 5'- -uGCGCG-GCAGcGCCUGCacgaagGGCGGCc -3' miRNA: 3'- gcCGCGCaCGUCcCGGACGg-----CUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 99128 | 0.69 | 0.482019 |
Target: 5'- aCGGCaac-GCAGGuGCg-GCCGACGGCg -3' miRNA: 3'- -GCCGcgcaCGUCC-CGgaCGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 120519 | 0.69 | 0.498714 |
Target: 5'- uGGCGCc-GCucgacgaugucgAGGGUCuccggugUGCCGGCGGCg -3' miRNA: 3'- gCCGCGcaCG------------UCCCGG-------ACGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 31031 | 0.69 | 0.507604 |
Target: 5'- uCGGcCGCG-GCccugccgagcgccAGGaGUCUGuuGACGGCg -3' miRNA: 3'- -GCC-GCGCaCG-------------UCC-CGGACggCUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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