miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15858 5' -64.2 NC_004065.1 + 80381 1.11 0.000693
Target:  5'- gCGGCGCGUGCAGGGCCUGCCGACGGCg -3'
miRNA:   3'- -GCCGCGCACGUCCCGGACGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 198994 0.85 0.046087
Target:  5'- uGGCGCucgGCAGGGCCgcgGCCGAgGGCa -3'
miRNA:   3'- gCCGCGca-CGUCCCGGa--CGGCUgCCG- -5'
15858 5' -64.2 NC_004065.1 + 139896 0.78 0.148781
Target:  5'- aGGUGgccGCGGGGCCUccgGCCGGCGGCg -3'
miRNA:   3'- gCCGCgcaCGUCCCGGA---CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 104834 0.78 0.132157
Target:  5'- uGGCGUcaGCGGGGCCUGCUGGCGuucGCc -3'
miRNA:   3'- gCCGCGcaCGUCCCGGACGGCUGC---CG- -5'
15858 5' -64.2 NC_004065.1 + 74668 0.78 0.132157
Target:  5'- gCGGCGCGUccgccguagcGCAGGGUCcgauUGCCGAUGGg -3'
miRNA:   3'- -GCCGCGCA----------CGUCCCGG----ACGGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 45997 0.77 0.163427
Target:  5'- gGGCGcCGUgGCGgcguugaacucGGGUCUGCCGAUGGCc -3'
miRNA:   3'- gCCGC-GCA-CGU-----------CCCGGACGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 177488 0.77 0.171227
Target:  5'- gGGCGCacgGCGGGGCC-GCCGGgGGUc -3'
miRNA:   3'- gCCGCGca-CGUCCCGGaCGGCUgCCG- -5'
15858 5' -64.2 NC_004065.1 + 139663 0.77 0.171227
Target:  5'- gCGGCGCGUGCGGcGGCCgcUGCUGucacACGuGCu -3'
miRNA:   3'- -GCCGCGCACGUC-CCGG--ACGGC----UGC-CG- -5'
15858 5' -64.2 NC_004065.1 + 61871 0.76 0.187829
Target:  5'- -cGCGCGa--AGGGCCUGCUGACGGg -3'
miRNA:   3'- gcCGCGCacgUCCCGGACGGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 94953 0.76 0.187829
Target:  5'- uGGCGC-UGCGGGGCCcGCuCcGCGGCu -3'
miRNA:   3'- gCCGCGcACGUCCCGGaCG-GcUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 36087 0.75 0.208658
Target:  5'- gCGGCGUuaguggaaacaaccGUGgcggcaaCGGGGCCgcUGCCGGCGGCg -3'
miRNA:   3'- -GCCGCG--------------CAC-------GUCCCGG--ACGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 101434 0.74 0.25183
Target:  5'- uGGCGCGUGCGGaugcGCCUucgccGCCGACGucGCu -3'
miRNA:   3'- gCCGCGCACGUCc---CGGA-----CGGCUGC--CG- -5'
15858 5' -64.2 NC_004065.1 + 128767 0.74 0.25183
Target:  5'- gCGGCaGCGUugaGGGcGCCgucGCCGGCGGCa -3'
miRNA:   3'- -GCCG-CGCAcg-UCC-CGGa--CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 136647 0.73 0.28087
Target:  5'- gCGGCGUGgauccuggugGCGagcgacgggcGGGUCUgGCCGGCGGCg -3'
miRNA:   3'- -GCCGCGCa---------CGU----------CCCGGA-CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 64202 0.73 0.274856
Target:  5'- aGGCgGCGgGCGGaGGCagUGUCGGCGGCg -3'
miRNA:   3'- gCCG-CGCaCGUC-CCGg-ACGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 104704 0.73 0.29321
Target:  5'- aGGUGC-UGC-GGGCCUcGCUGACGGa -3'
miRNA:   3'- gCCGCGcACGuCCCGGA-CGGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 175932 0.73 0.286988
Target:  5'- aCGGCgGCGUauaugGCucuGGCuCUGCCGACGGUg -3'
miRNA:   3'- -GCCG-CGCA-----CGuc-CCG-GACGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 142390 0.72 0.342521
Target:  5'- aGGCGCGcaguucgcgcucgcGCGGGccaucuuucGCCUGCCGGCGcGCc -3'
miRNA:   3'- gCCGCGCa-------------CGUCC---------CGGACGGCUGC-CG- -5'
15858 5' -64.2 NC_004065.1 + 78890 0.72 0.33275
Target:  5'- gGaGCGCGUGCaccaccugcaAGGaGacgacgagaCUGCCGACGGCg -3'
miRNA:   3'- gC-CGCGCACG----------UCC-Cg--------GACGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 19758 0.72 0.325896
Target:  5'- gGGgGCGUGCGGGGgUgugGgCGACGGa -3'
miRNA:   3'- gCCgCGCACGUCCCgGa--CgGCUGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.