Results 41 - 60 of 131 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15858 | 5' | -64.2 | NC_004065.1 | + | 77418 | 0.7 | 0.42303 |
Target: 5'- uGGCG-GUGacccGGGCgCUGCUGACGGa -3' miRNA: 3'- gCCGCgCACgu--CCCG-GACGGCUGCCg -5' |
|||||||
15858 | 5' | -64.2 | NC_004065.1 | + | 161024 | 0.7 | 0.446955 |
Target: 5'- aGGCGgcaucgaCGUGCAgGGGCCgGUCGAcgcuaucuauCGGCa -3' miRNA: 3'- gCCGC-------GCACGU-CCCGGaCGGCU----------GCCG- -5' |
|||||||
15858 | 5' | -64.2 | NC_004065.1 | + | 120519 | 0.69 | 0.498714 |
Target: 5'- uGGCGCc-GCucgacgaugucgAGGGUCuccggugUGCCGGCGGCg -3' miRNA: 3'- gCCGCGcaCG------------UCCCGG-------ACGGCUGCCG- -5' |
|||||||
15858 | 5' | -64.2 | NC_004065.1 | + | 124957 | 0.69 | 0.473341 |
Target: 5'- -uGCGCG-GCAGcGCCUGCacgaagGGCGGCc -3' miRNA: 3'- gcCGCGCaCGUCcCGGACGg-----CUGCCG- -5' |
|||||||
15858 | 5' | -64.2 | NC_004065.1 | + | 168627 | 0.69 | 0.508497 |
Target: 5'- uGGCGCugGUGCcgcGGGCggaGCCGgcGCGGCg -3' miRNA: 3'- gCCGCG--CACGu--CCCGga-CGGC--UGCCG- -5' |
|||||||
15858 | 5' | -64.2 | NC_004065.1 | + | 59574 | 0.69 | 0.482019 |
Target: 5'- gCGGCaGCGa--AGGcGCCU-CCGGCGGCg -3' miRNA: 3'- -GCCG-CGCacgUCC-CGGAcGGCUGCCG- -5' |
|||||||
15858 | 5' | -64.2 | NC_004065.1 | + | 108666 | 0.69 | 0.508497 |
Target: 5'- uGGCGCccGUGCGGauGGaCCUGCUGuGCGuGCa -3' miRNA: 3'- gCCGCG--CACGUC--CC-GGACGGC-UGC-CG- -5' |
|||||||
15858 | 5' | -64.2 | NC_004065.1 | + | 31031 | 0.69 | 0.507604 |
Target: 5'- uCGGcCGCG-GCccugccgagcgccAGGaGUCUGuuGACGGCg -3' miRNA: 3'- -GCC-GCGCaCG-------------UCC-CGGACggCUGCCG- -5' |
|||||||
15858 | 5' | -64.2 | NC_004065.1 | + | 99128 | 0.69 | 0.482019 |
Target: 5'- aCGGCaac-GCAGGuGCg-GCCGACGGCg -3' miRNA: 3'- -GCCGcgcaCGUCC-CGgaCGGCUGCCG- -5' |
|||||||
15858 | 5' | -64.2 | NC_004065.1 | + | 148573 | 0.69 | 0.456225 |
Target: 5'- gGGUcagcccCGUGCGGGGCCUGgUGcCGGUc -3' miRNA: 3'- gCCGc-----GCACGUCCCGGACgGCuGCCG- -5' |
|||||||
15858 | 5' | -64.2 | NC_004065.1 | + | 106161 | 0.69 | 0.4996 |
Target: 5'- gCGGCGCGUGCGgagcgacauGGGCUcGCgGAU-GCa -3' miRNA: 3'- -GCCGCGCACGU---------CCCGGaCGgCUGcCG- -5' |
|||||||
15858 | 5' | -64.2 | NC_004065.1 | + | 31795 | 0.69 | 0.464742 |
Target: 5'- gGGUGCuggGCuacaggccggGGGGCCUGCCGgacGCGGa -3' miRNA: 3'- gCCGCGca-CG----------UCCCGGACGGC---UGCCg -5' |
|||||||
15858 | 5' | -64.2 | NC_004065.1 | + | 104902 | 0.69 | 0.490773 |
Target: 5'- gGGCGaCGgcGCGGuGGU--GCCGGCGGCg -3' miRNA: 3'- gCCGC-GCa-CGUC-CCGgaCGGCUGCCG- -5' |
|||||||
15858 | 5' | -64.2 | NC_004065.1 | + | 5420 | 0.69 | 0.482019 |
Target: 5'- gGGcCGCGUGCGuuGGGaacaaCUccCCGACGGCg -3' miRNA: 3'- gCC-GCGCACGU--CCCg----GAc-GGCUGCCG- -5' |
|||||||
15858 | 5' | -64.2 | NC_004065.1 | + | 116316 | 0.69 | 0.473341 |
Target: 5'- uCGGCGuCG-GCGGcGGCagcGgCGACGGCg -3' miRNA: 3'- -GCCGC-GCaCGUC-CCGga-CgGCUGCCG- -5' |
|||||||
15858 | 5' | -64.2 | NC_004065.1 | + | 65315 | 0.69 | 0.473341 |
Target: 5'- --cCGCGUGguGGGaCCgGCggCGGCGGCg -3' miRNA: 3'- gccGCGCACguCCC-GGaCG--GCUGCCG- -5' |
|||||||
15858 | 5' | -64.2 | NC_004065.1 | + | 78033 | 0.69 | 0.508497 |
Target: 5'- uGGCGUGcGCcGGGUCccugaugagGCCGGCGGg -3' miRNA: 3'- gCCGCGCaCGuCCCGGa--------CGGCUGCCg -5' |
|||||||
15858 | 5' | -64.2 | NC_004065.1 | + | 19841 | 0.68 | 0.53557 |
Target: 5'- gCGGCG-GUGUcGGGacgaagCUGCCGaAUGGCg -3' miRNA: 3'- -GCCGCgCACGuCCCg-----GACGGC-UGCCG- -5' |
|||||||
15858 | 5' | -64.2 | NC_004065.1 | + | 200785 | 0.68 | 0.53557 |
Target: 5'- -cGCGCG-GCGGuGGCg-GgCGACGGCg -3' miRNA: 3'- gcCGCGCaCGUC-CCGgaCgGCUGCCG- -5' |
|||||||
15858 | 5' | -64.2 | NC_004065.1 | + | 78656 | 0.68 | 0.53557 |
Target: 5'- uCGGcCGCcagcGCAGcGGCCggcGCCG-CGGCg -3' miRNA: 3'- -GCC-GCGca--CGUC-CCGGa--CGGCuGCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home