miRNA display CGI


Results 41 - 60 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15858 5' -64.2 NC_004065.1 + 124435 0.7 0.431194
Target:  5'- aGGaCGUGcUGCAGcgacucgaaGCCcGCCGACGGCg -3'
miRNA:   3'- gCC-GCGC-ACGUCc--------CGGaCGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 161024 0.7 0.446955
Target:  5'- aGGCGgcaucgaCGUGCAgGGGCCgGUCGAcgcuaucuauCGGCa -3'
miRNA:   3'- gCCGC-------GCACGU-CCCGGaCGGCU----------GCCG- -5'
15858 5' -64.2 NC_004065.1 + 148573 0.69 0.456225
Target:  5'- gGGUcagcccCGUGCGGGGCCUGgUGcCGGUc -3'
miRNA:   3'- gCCGc-----GCACGUCCCGGACgGCuGCCG- -5'
15858 5' -64.2 NC_004065.1 + 31795 0.69 0.464742
Target:  5'- gGGUGCuggGCuacaggccggGGGGCCUGCCGgacGCGGa -3'
miRNA:   3'- gCCGCGca-CG----------UCCCGGACGGC---UGCCg -5'
15858 5' -64.2 NC_004065.1 + 124957 0.69 0.473341
Target:  5'- -uGCGCG-GCAGcGCCUGCacgaagGGCGGCc -3'
miRNA:   3'- gcCGCGCaCGUCcCGGACGg-----CUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 65315 0.69 0.473341
Target:  5'- --cCGCGUGguGGGaCCgGCggCGGCGGCg -3'
miRNA:   3'- gccGCGCACguCCC-GGaCG--GCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 116316 0.69 0.473341
Target:  5'- uCGGCGuCG-GCGGcGGCagcGgCGACGGCg -3'
miRNA:   3'- -GCCGC-GCaCGUC-CCGga-CgGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 99128 0.69 0.482019
Target:  5'- aCGGCaac-GCAGGuGCg-GCCGACGGCg -3'
miRNA:   3'- -GCCGcgcaCGUCC-CGgaCGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 5420 0.69 0.482019
Target:  5'- gGGcCGCGUGCGuuGGGaacaaCUccCCGACGGCg -3'
miRNA:   3'- gCC-GCGCACGU--CCCg----GAc-GGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 59574 0.69 0.482019
Target:  5'- gCGGCaGCGa--AGGcGCCU-CCGGCGGCg -3'
miRNA:   3'- -GCCG-CGCacgUCC-CGGAcGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 104902 0.69 0.490773
Target:  5'- gGGCGaCGgcGCGGuGGU--GCCGGCGGCg -3'
miRNA:   3'- gCCGC-GCa-CGUC-CCGgaCGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 120519 0.69 0.498714
Target:  5'- uGGCGCc-GCucgacgaugucgAGGGUCuccggugUGCCGGCGGCg -3'
miRNA:   3'- gCCGCGcaCG------------UCCCGG-------ACGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 106161 0.69 0.4996
Target:  5'- gCGGCGCGUGCGgagcgacauGGGCUcGCgGAU-GCa -3'
miRNA:   3'- -GCCGCGCACGU---------CCCGGaCGgCUGcCG- -5'
15858 5' -64.2 NC_004065.1 + 31031 0.69 0.507604
Target:  5'- uCGGcCGCG-GCccugccgagcgccAGGaGUCUGuuGACGGCg -3'
miRNA:   3'- -GCC-GCGCaCG-------------UCC-CGGACggCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 168627 0.69 0.508497
Target:  5'- uGGCGCugGUGCcgcGGGCggaGCCGgcGCGGCg -3'
miRNA:   3'- gCCGCG--CACGu--CCCGga-CGGC--UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 108666 0.69 0.508497
Target:  5'- uGGCGCccGUGCGGauGGaCCUGCUGuGCGuGCa -3'
miRNA:   3'- gCCGCG--CACGUC--CC-GGACGGC-UGC-CG- -5'
15858 5' -64.2 NC_004065.1 + 78033 0.69 0.508497
Target:  5'- uGGCGUGcGCcGGGUCccugaugagGCCGGCGGg -3'
miRNA:   3'- gCCGCGCaCGuCCCGGa--------CGGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 166514 0.68 0.525581
Target:  5'- aCGGcCGCGaggGCGaGGCCauccgcaccuggcUGCgCGACGGCg -3'
miRNA:   3'- -GCC-GCGCa--CGUcCCGG-------------ACG-GCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 130180 0.68 0.525581
Target:  5'- cCGGCGCcaucugGUGCgacGGGGCCgUGCucaugagCGACGGg -3'
miRNA:   3'- -GCCGCG------CACG---UCCCGG-ACG-------GCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 90525 0.68 0.526486
Target:  5'- aGGUG-GUGCGGGGaguacuucucguCCcGcCCGACGGCc -3'
miRNA:   3'- gCCGCgCACGUCCC------------GGaC-GGCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.