miRNA display CGI


Results 61 - 80 of 131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15858 5' -64.2 NC_004065.1 + 119594 0.68 0.526486
Target:  5'- uGGCcuggaCGUGCAGGac--GCCGGCGGCg -3'
miRNA:   3'- gCCGc----GCACGUCCcggaCGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 63489 0.68 0.532839
Target:  5'- aGGCGCcgucgcgcagccagGUGCGGauGGCCUcGCCcucGCGGCc -3'
miRNA:   3'- gCCGCG--------------CACGUC--CCGGA-CGGc--UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 102023 0.68 0.534659
Target:  5'- uGGCGCG-GC-GGGCCaccucggUGaCCcGCGGCg -3'
miRNA:   3'- gCCGCGCaCGuCCCGG-------AC-GGcUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 200785 0.68 0.53557
Target:  5'- -cGCGCG-GCGGuGGCg-GgCGACGGCg -3'
miRNA:   3'- gcCGCGCaCGUC-CCGgaCgGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 151359 0.68 0.53557
Target:  5'- gGGCGCc-GCGGcgccGGCCgcugcGCUGGCGGCc -3'
miRNA:   3'- gCCGCGcaCGUC----CCGGa----CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 78656 0.68 0.53557
Target:  5'- uCGGcCGCcagcGCAGcGGCCggcGCCG-CGGCg -3'
miRNA:   3'- -GCC-GCGca--CGUC-CCGGa--CGGCuGCCG- -5'
15858 5' -64.2 NC_004065.1 + 19841 0.68 0.53557
Target:  5'- gCGGCG-GUGUcGGGacgaagCUGCCGaAUGGCg -3'
miRNA:   3'- -GCCGCgCACGuCCCg-----GACGGC-UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 118250 0.68 0.544709
Target:  5'- aCGGaCGCGUGgA--GCUcGCCGGCGGCc -3'
miRNA:   3'- -GCC-GCGCACgUccCGGaCGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 141640 0.68 0.544709
Target:  5'- uCGGCGaCGgaggGCGGuGGCggUGCCG-CGGCc -3'
miRNA:   3'- -GCCGC-GCa---CGUC-CCGg-ACGGCuGCCG- -5'
15858 5' -64.2 NC_004065.1 + 103755 0.68 0.544709
Target:  5'- -cGCGCG-GCGGGGCCUccgGaCCGuCGcGCa -3'
miRNA:   3'- gcCGCGCaCGUCCCGGA---C-GGCuGC-CG- -5'
15858 5' -64.2 NC_004065.1 + 120565 0.68 0.544709
Target:  5'- uCGGCGCGagcggGCGGGaCCUccggcGCCGGucuCGGCc -3'
miRNA:   3'- -GCCGCGCa----CGUCCcGGA-----CGGCU---GCCG- -5'
15858 5' -64.2 NC_004065.1 + 83420 0.68 0.553897
Target:  5'- aCGGCGUc--CAGGGU--GUCGACGGCg -3'
miRNA:   3'- -GCCGCGcacGUCCCGgaCGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 106610 0.68 0.553897
Target:  5'- aCGGUGCGccgacuccauCAGGGcCCUGaCCGAUGGa -3'
miRNA:   3'- -GCCGCGCac--------GUCCC-GGAC-GGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 121478 0.68 0.553897
Target:  5'- uCGGCGCGUccGC-GGGCgUGaaGGUGGCg -3'
miRNA:   3'- -GCCGCGCA--CGuCCCGgACggCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 66129 0.68 0.563131
Target:  5'- aGGCGCuGgcgcGCuGGGCC-GCgGAcCGGCg -3'
miRNA:   3'- gCCGCG-Ca---CGuCCCGGaCGgCU-GCCG- -5'
15858 5' -64.2 NC_004065.1 + 126720 0.68 0.563131
Target:  5'- gCGGCGaccGCuGaGCCUGCCGccGCGGCc -3'
miRNA:   3'- -GCCGCgcaCGuCcCGGACGGC--UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 105102 0.67 0.571476
Target:  5'- uGGUGCGcGUGGuGGCCgacgacgUGCCGcuggacGCGGCg -3'
miRNA:   3'- gCCGCGCaCGUC-CCGG-------ACGGC------UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 96851 0.67 0.572405
Target:  5'- aCGGCGCGcugucgccGCGGGcGCCguucugGCCGugGa- -3'
miRNA:   3'- -GCCGCGCa-------CGUCC-CGGa-----CGGCugCcg -5'
15858 5' -64.2 NC_004065.1 + 76737 0.67 0.572405
Target:  5'- uCGGCGgGgac-GGGCgCggcGCCGGCGGCc -3'
miRNA:   3'- -GCCGCgCacguCCCG-Ga--CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 127619 0.67 0.581715
Target:  5'- cCGGCGCucuacGUGCAccgcucGCgCUGCCGcuGCGGCg -3'
miRNA:   3'- -GCCGCG-----CACGUcc----CG-GACGGC--UGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.