Results 81 - 100 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15858 | 5' | -64.2 | NC_004065.1 | + | 208041 | 0.67 | 0.581715 |
Target: 5'- uCGGCGUGgccGUGGcGGCCcucaccguccUGCCGAcgaCGGCc -3' miRNA: 3'- -GCCGCGCa--CGUC-CCGG----------ACGGCU---GCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 64297 | 0.67 | 0.588251 |
Target: 5'- gCGGCGCGcGUcucggacauccaacAGGGUCUGCUGGacuCGGa -3' miRNA: 3'- -GCCGCGCaCG--------------UCCCGGACGGCU---GCCg -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 141607 | 0.67 | 0.591056 |
Target: 5'- aCGGCG---GC-GGGCuccgCUGCCGGCGGUg -3' miRNA: 3'- -GCCGCgcaCGuCCCG----GACGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 206573 | 0.67 | 0.59761 |
Target: 5'- -uGCGUGUGCacgauGGGGCCucggUcaagcggggggaugGCCGACGGUa -3' miRNA: 3'- gcCGCGCACG-----UCCCGG----A--------------CGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 195056 | 0.67 | 0.600422 |
Target: 5'- aCGGCGUcucucugaaGUGCAggucGGGCgaGCgCG-CGGCg -3' miRNA: 3'- -GCCGCG---------CACGU----CCCGgaCG-GCuGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 118499 | 0.67 | 0.600422 |
Target: 5'- -uGCuGCG-GUGGGGCCUGUCGcucggguuCGGCa -3' miRNA: 3'- gcCG-CGCaCGUCCCGGACGGCu-------GCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 56619 | 0.67 | 0.600422 |
Target: 5'- gCGGcCGCGgauguggaUGCGGuGGCagcgGCCG-CGGCa -3' miRNA: 3'- -GCC-GCGC--------ACGUC-CCGga--CGGCuGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 153882 | 0.67 | 0.600422 |
Target: 5'- aCGGUG-GUGUucguGGGGaCCcGCUGGCGGUc -3' miRNA: 3'- -GCCGCgCACG----UCCC-GGaCGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 128397 | 0.67 | 0.600422 |
Target: 5'- cCGGC-UGUG-GGGGCCgagcgGCagCGGCGGCg -3' miRNA: 3'- -GCCGcGCACgUCCCGGa----CG--GCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 82522 | 0.67 | 0.609809 |
Target: 5'- uGuuGuCGUGCAGGGCCccguccagggGCUGgACGGCc -3' miRNA: 3'- gCcgC-GCACGUCCCGGa---------CGGC-UGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 189106 | 0.67 | 0.609809 |
Target: 5'- cCGGUGUcucuGUGCucAGGGCCcggacaaGCCGGCGcGUg -3' miRNA: 3'- -GCCGCG----CACG--UCCCGGa------CGGCUGC-CG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 108803 | 0.67 | 0.609809 |
Target: 5'- uGGCGUG-GCGGccguucagccgcGGCaacagGCUGACGGCc -3' miRNA: 3'- gCCGCGCaCGUC------------CCGga---CGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 149923 | 0.67 | 0.609809 |
Target: 5'- gGGCGCGcggcucgGCAggaggcGGGCUUGauccacaGACGGCg -3' miRNA: 3'- gCCGCGCa------CGU------CCCGGACgg-----CUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 79283 | 0.67 | 0.613567 |
Target: 5'- aCGGCaucaGCGUggGCGagcugucgacggccuGGGCCUcccaCCGGCGGCg -3' miRNA: 3'- -GCCG----CGCA--CGU---------------CCCGGAc---GGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 128365 | 0.67 | 0.619208 |
Target: 5'- uGGUGCGcccauCGGGGCU--UCGGCGGCg -3' miRNA: 3'- gCCGCGCac---GUCCCGGacGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 115039 | 0.67 | 0.619208 |
Target: 5'- -cGCGCGgccGcCAGGGCCgaggGCa-ACGGCg -3' miRNA: 3'- gcCGCGCa--C-GUCCCGGa---CGgcUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 105560 | 0.67 | 0.619208 |
Target: 5'- cCGGCGCagcgGCAcGGCgC-GCCGuCGGCg -3' miRNA: 3'- -GCCGCGca--CGUcCCG-GaCGGCuGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 120492 | 0.67 | 0.619208 |
Target: 5'- aCGGUGuCGUGCccGGGGuagacggugaCCUGCuCcACGGCg -3' miRNA: 3'- -GCCGC-GCACG--UCCC----------GGACG-GcUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 29412 | 0.66 | 0.628617 |
Target: 5'- aGGCGCc-GguGGGCCaggGCagggagaaGACGGUg -3' miRNA: 3'- gCCGCGcaCguCCCGGa--CGg-------CUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 119438 | 0.66 | 0.628617 |
Target: 5'- cCGuGCGCGUGguGGucGCCgagaCCGACgccuGGCg -3' miRNA: 3'- -GC-CGCGCACguCC--CGGac--GGCUG----CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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