miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15858 5' -64.2 NC_004065.1 + 101261 0.66 0.638027
Target:  5'- aCGGCGCccucaacgcUGCcGcuGCCgcUGCCGACGGCu -3'
miRNA:   3'- -GCCGCGc--------ACGuCc-CGG--ACGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 31587 0.66 0.638027
Target:  5'- gCGGCGaCGUcGguGGGCUacacucGCUucgugGACGGCa -3'
miRNA:   3'- -GCCGC-GCA-CguCCCGGa-----CGG-----CUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 4380 0.66 0.632381
Target:  5'- aCGGCgGCG-GCGGGaGCCggagUGCUGuucggagcgguggccACGGCg -3'
miRNA:   3'- -GCCG-CGCaCGUCC-CGG----ACGGC---------------UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 110190 0.66 0.632381
Target:  5'- gCGGcCGCGacgcgccgccGCccgucgagagggaagAGGGCUUcGCCGGCGGCu -3'
miRNA:   3'- -GCC-GCGCa---------CG---------------UCCCGGA-CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 25017 0.66 0.628617
Target:  5'- gGGCGCG-GCaaGGGGCCgUGucccgacccuCCGACGuGUg -3'
miRNA:   3'- gCCGCGCaCG--UCCCGG-AC----------GGCUGC-CG- -5'
15858 5' -64.2 NC_004065.1 + 52485 0.66 0.628617
Target:  5'- gCGGUgGgGUGUuGGGCgCUGuuGGCGcGCg -3'
miRNA:   3'- -GCCG-CgCACGuCCCG-GACggCUGC-CG- -5'
15858 5' -64.2 NC_004065.1 + 165362 0.66 0.628617
Target:  5'- uCGGUG-GUGCAGaucucGGCCaGCaCGGCGGa -3'
miRNA:   3'- -GCCGCgCACGUC-----CCGGaCG-GCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 76888 0.66 0.628617
Target:  5'- aGGUGaCGaGCcGGGuCUUGCCGAaGGCg -3'
miRNA:   3'- gCCGC-GCaCGuCCC-GGACGGCUgCCG- -5'
15858 5' -64.2 NC_004065.1 + 119438 0.66 0.628617
Target:  5'- cCGuGCGCGUGguGGucGCCgagaCCGACgccuGGCg -3'
miRNA:   3'- -GC-CGCGCACguCC--CGGac--GGCUG----CCG- -5'
15858 5' -64.2 NC_004065.1 + 96662 0.66 0.628617
Target:  5'- uCGGCGuCG-GC-GGGCUcGcCCGACGGa -3'
miRNA:   3'- -GCCGC-GCaCGuCCCGGaC-GGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 29412 0.66 0.628617
Target:  5'- aGGCGCc-GguGGGCCaggGCagggagaaGACGGUg -3'
miRNA:   3'- gCCGCGcaCguCCCGGa--CGg-------CUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 197890 0.66 0.628617
Target:  5'- aGGCGUaGUGCucGGCCaUGCaauCGGCg -3'
miRNA:   3'- gCCGCG-CACGucCCGG-ACGgcuGCCG- -5'
15858 5' -64.2 NC_004065.1 + 92430 0.66 0.628617
Target:  5'- uCGG-GCGgGCAGGGCgUUGCC-AUGGUu -3'
miRNA:   3'- -GCCgCGCaCGUCCCG-GACGGcUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 128365 0.67 0.619208
Target:  5'- uGGUGCGcccauCGGGGCU--UCGGCGGCg -3'
miRNA:   3'- gCCGCGCac---GUCCCGGacGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 120492 0.67 0.619208
Target:  5'- aCGGUGuCGUGCccGGGGuagacggugaCCUGCuCcACGGCg -3'
miRNA:   3'- -GCCGC-GCACG--UCCC----------GGACG-GcUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 105560 0.67 0.619208
Target:  5'- cCGGCGCagcgGCAcGGCgC-GCCGuCGGCg -3'
miRNA:   3'- -GCCGCGca--CGUcCCG-GaCGGCuGCCG- -5'
15858 5' -64.2 NC_004065.1 + 115039 0.67 0.619208
Target:  5'- -cGCGCGgccGcCAGGGCCgaggGCa-ACGGCg -3'
miRNA:   3'- gcCGCGCa--C-GUCCCGGa---CGgcUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 79283 0.67 0.613567
Target:  5'- aCGGCaucaGCGUggGCGagcugucgacggccuGGGCCUcccaCCGGCGGCg -3'
miRNA:   3'- -GCCG----CGCA--CGU---------------CCCGGAc---GGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 82522 0.67 0.609809
Target:  5'- uGuuGuCGUGCAGGGCCccguccagggGCUGgACGGCc -3'
miRNA:   3'- gCcgC-GCACGUCCCGGa---------CGGC-UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 149923 0.67 0.609809
Target:  5'- gGGCGCGcggcucgGCAggaggcGGGCUUGauccacaGACGGCg -3'
miRNA:   3'- gCCGCGCa------CGU------CCCGGACgg-----CUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.