miRNA display CGI


Results 41 - 60 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15858 5' -64.2 NC_004065.1 + 189106 0.67 0.609809
Target:  5'- cCGGUGUcucuGUGCucAGGGCCcggacaaGCCGGCGcGUg -3'
miRNA:   3'- -GCCGCG----CACG--UCCCGGa------CGGCUGC-CG- -5'
15858 5' -64.2 NC_004065.1 + 82522 0.67 0.609809
Target:  5'- uGuuGuCGUGCAGGGCCccguccagggGCUGgACGGCc -3'
miRNA:   3'- gCcgC-GCACGUCCCGGa---------CGGC-UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 153882 0.67 0.600422
Target:  5'- aCGGUG-GUGUucguGGGGaCCcGCUGGCGGUc -3'
miRNA:   3'- -GCCGCgCACG----UCCC-GGaCGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 128397 0.67 0.600422
Target:  5'- cCGGC-UGUG-GGGGCCgagcgGCagCGGCGGCg -3'
miRNA:   3'- -GCCGcGCACgUCCCGGa----CG--GCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 56619 0.67 0.600422
Target:  5'- gCGGcCGCGgauguggaUGCGGuGGCagcgGCCG-CGGCa -3'
miRNA:   3'- -GCC-GCGC--------ACGUC-CCGga--CGGCuGCCG- -5'
15858 5' -64.2 NC_004065.1 + 118499 0.67 0.600422
Target:  5'- -uGCuGCG-GUGGGGCCUGUCGcucggguuCGGCa -3'
miRNA:   3'- gcCG-CGCaCGUCCCGGACGGCu-------GCCG- -5'
15858 5' -64.2 NC_004065.1 + 195056 0.67 0.600422
Target:  5'- aCGGCGUcucucugaaGUGCAggucGGGCgaGCgCG-CGGCg -3'
miRNA:   3'- -GCCGCG---------CACGU----CCCGgaCG-GCuGCCG- -5'
15858 5' -64.2 NC_004065.1 + 206573 0.67 0.59761
Target:  5'- -uGCGUGUGCacgauGGGGCCucggUcaagcggggggaugGCCGACGGUa -3'
miRNA:   3'- gcCGCGCACG-----UCCCGG----A--------------CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 141607 0.67 0.591056
Target:  5'- aCGGCG---GC-GGGCuccgCUGCCGGCGGUg -3'
miRNA:   3'- -GCCGCgcaCGuCCCG----GACGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 64297 0.67 0.588251
Target:  5'- gCGGCGCGcGUcucggacauccaacAGGGUCUGCUGGacuCGGa -3'
miRNA:   3'- -GCCGCGCaCG--------------UCCCGGACGGCU---GCCg -5'
15858 5' -64.2 NC_004065.1 + 208041 0.67 0.581715
Target:  5'- uCGGCGUGgccGUGGcGGCCcucaccguccUGCCGAcgaCGGCc -3'
miRNA:   3'- -GCCGCGCa--CGUC-CCGG----------ACGGCU---GCCG- -5'
15858 5' -64.2 NC_004065.1 + 127619 0.67 0.581715
Target:  5'- cCGGCGCucuacGUGCAccgcucGCgCUGCCGcuGCGGCg -3'
miRNA:   3'- -GCCGCG-----CACGUcc----CG-GACGGC--UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 96851 0.67 0.572405
Target:  5'- aCGGCGCGcugucgccGCGGGcGCCguucugGCCGugGa- -3'
miRNA:   3'- -GCCGCGCa-------CGUCC-CGGa-----CGGCugCcg -5'
15858 5' -64.2 NC_004065.1 + 76737 0.67 0.572405
Target:  5'- uCGGCGgGgac-GGGCgCggcGCCGGCGGCc -3'
miRNA:   3'- -GCCGCgCacguCCCG-Ga--CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 105102 0.67 0.571476
Target:  5'- uGGUGCGcGUGGuGGCCgacgacgUGCCGcuggacGCGGCg -3'
miRNA:   3'- gCCGCGCaCGUC-CCGG-------ACGGC------UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 126720 0.68 0.563131
Target:  5'- gCGGCGaccGCuGaGCCUGCCGccGCGGCc -3'
miRNA:   3'- -GCCGCgcaCGuCcCGGACGGC--UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 66129 0.68 0.563131
Target:  5'- aGGCGCuGgcgcGCuGGGCC-GCgGAcCGGCg -3'
miRNA:   3'- gCCGCG-Ca---CGuCCCGGaCGgCU-GCCG- -5'
15858 5' -64.2 NC_004065.1 + 106610 0.68 0.553897
Target:  5'- aCGGUGCGccgacuccauCAGGGcCCUGaCCGAUGGa -3'
miRNA:   3'- -GCCGCGCac--------GUCCC-GGAC-GGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 121478 0.68 0.553897
Target:  5'- uCGGCGCGUccGC-GGGCgUGaaGGUGGCg -3'
miRNA:   3'- -GCCGCGCA--CGuCCCGgACggCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 83420 0.68 0.553897
Target:  5'- aCGGCGUc--CAGGGU--GUCGACGGCg -3'
miRNA:   3'- -GCCGCGcacGUCCCGgaCGGCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.