miRNA display CGI


Results 61 - 80 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15858 5' -64.2 NC_004065.1 + 120565 0.68 0.544709
Target:  5'- uCGGCGCGagcggGCGGGaCCUccggcGCCGGucuCGGCc -3'
miRNA:   3'- -GCCGCGCa----CGUCCcGGA-----CGGCU---GCCG- -5'
15858 5' -64.2 NC_004065.1 + 103755 0.68 0.544709
Target:  5'- -cGCGCG-GCGGGGCCUccgGaCCGuCGcGCa -3'
miRNA:   3'- gcCGCGCaCGUCCCGGA---C-GGCuGC-CG- -5'
15858 5' -64.2 NC_004065.1 + 141640 0.68 0.544709
Target:  5'- uCGGCGaCGgaggGCGGuGGCggUGCCG-CGGCc -3'
miRNA:   3'- -GCCGC-GCa---CGUC-CCGg-ACGGCuGCCG- -5'
15858 5' -64.2 NC_004065.1 + 118250 0.68 0.544709
Target:  5'- aCGGaCGCGUGgA--GCUcGCCGGCGGCc -3'
miRNA:   3'- -GCC-GCGCACgUccCGGaCGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 151359 0.68 0.53557
Target:  5'- gGGCGCc-GCGGcgccGGCCgcugcGCUGGCGGCc -3'
miRNA:   3'- gCCGCGcaCGUC----CCGGa----CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 78656 0.68 0.53557
Target:  5'- uCGGcCGCcagcGCAGcGGCCggcGCCG-CGGCg -3'
miRNA:   3'- -GCC-GCGca--CGUC-CCGGa--CGGCuGCCG- -5'
15858 5' -64.2 NC_004065.1 + 200785 0.68 0.53557
Target:  5'- -cGCGCG-GCGGuGGCg-GgCGACGGCg -3'
miRNA:   3'- gcCGCGCaCGUC-CCGgaCgGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 19841 0.68 0.53557
Target:  5'- gCGGCG-GUGUcGGGacgaagCUGCCGaAUGGCg -3'
miRNA:   3'- -GCCGCgCACGuCCCg-----GACGGC-UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 102023 0.68 0.534659
Target:  5'- uGGCGCG-GC-GGGCCaccucggUGaCCcGCGGCg -3'
miRNA:   3'- gCCGCGCaCGuCCCGG-------AC-GGcUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 63489 0.68 0.532839
Target:  5'- aGGCGCcgucgcgcagccagGUGCGGauGGCCUcGCCcucGCGGCc -3'
miRNA:   3'- gCCGCG--------------CACGUC--CCGGA-CGGc--UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 119594 0.68 0.526486
Target:  5'- uGGCcuggaCGUGCAGGac--GCCGGCGGCg -3'
miRNA:   3'- gCCGc----GCACGUCCcggaCGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 90525 0.68 0.526486
Target:  5'- aGGUG-GUGCGGGGaguacuucucguCCcGcCCGACGGCc -3'
miRNA:   3'- gCCGCgCACGUCCC------------GGaC-GGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 130180 0.68 0.525581
Target:  5'- cCGGCGCcaucugGUGCgacGGGGCCgUGCucaugagCGACGGg -3'
miRNA:   3'- -GCCGCG------CACG---UCCCGG-ACG-------GCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 166514 0.68 0.525581
Target:  5'- aCGGcCGCGaggGCGaGGCCauccgcaccuggcUGCgCGACGGCg -3'
miRNA:   3'- -GCC-GCGCa--CGUcCCGG-------------ACG-GCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 78033 0.69 0.508497
Target:  5'- uGGCGUGcGCcGGGUCccugaugagGCCGGCGGg -3'
miRNA:   3'- gCCGCGCaCGuCCCGGa--------CGGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 168627 0.69 0.508497
Target:  5'- uGGCGCugGUGCcgcGGGCggaGCCGgcGCGGCg -3'
miRNA:   3'- gCCGCG--CACGu--CCCGga-CGGC--UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 108666 0.69 0.508497
Target:  5'- uGGCGCccGUGCGGauGGaCCUGCUGuGCGuGCa -3'
miRNA:   3'- gCCGCG--CACGUC--CC-GGACGGC-UGC-CG- -5'
15858 5' -64.2 NC_004065.1 + 31031 0.69 0.507604
Target:  5'- uCGGcCGCG-GCccugccgagcgccAGGaGUCUGuuGACGGCg -3'
miRNA:   3'- -GCC-GCGCaCG-------------UCC-CGGACggCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 106161 0.69 0.4996
Target:  5'- gCGGCGCGUGCGgagcgacauGGGCUcGCgGAU-GCa -3'
miRNA:   3'- -GCCGCGCACGU---------CCCGGaCGgCUGcCG- -5'
15858 5' -64.2 NC_004065.1 + 120519 0.69 0.498714
Target:  5'- uGGCGCc-GCucgacgaugucgAGGGUCuccggugUGCCGGCGGCg -3'
miRNA:   3'- gCCGCGcaCG------------UCCCGG-------ACGGCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.