Results 81 - 100 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15858 | 5' | -64.2 | NC_004065.1 | + | 104902 | 0.69 | 0.490773 |
Target: 5'- gGGCGaCGgcGCGGuGGU--GCCGGCGGCg -3' miRNA: 3'- gCCGC-GCa-CGUC-CCGgaCGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 99128 | 0.69 | 0.482019 |
Target: 5'- aCGGCaac-GCAGGuGCg-GCCGACGGCg -3' miRNA: 3'- -GCCGcgcaCGUCC-CGgaCGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 59574 | 0.69 | 0.482019 |
Target: 5'- gCGGCaGCGa--AGGcGCCU-CCGGCGGCg -3' miRNA: 3'- -GCCG-CGCacgUCC-CGGAcGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 5420 | 0.69 | 0.482019 |
Target: 5'- gGGcCGCGUGCGuuGGGaacaaCUccCCGACGGCg -3' miRNA: 3'- gCC-GCGCACGU--CCCg----GAc-GGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 116316 | 0.69 | 0.473341 |
Target: 5'- uCGGCGuCG-GCGGcGGCagcGgCGACGGCg -3' miRNA: 3'- -GCCGC-GCaCGUC-CCGga-CgGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 65315 | 0.69 | 0.473341 |
Target: 5'- --cCGCGUGguGGGaCCgGCggCGGCGGCg -3' miRNA: 3'- gccGCGCACguCCC-GGaCG--GCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 124957 | 0.69 | 0.473341 |
Target: 5'- -uGCGCG-GCAGcGCCUGCacgaagGGCGGCc -3' miRNA: 3'- gcCGCGCaCGUCcCGGACGg-----CUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 31795 | 0.69 | 0.464742 |
Target: 5'- gGGUGCuggGCuacaggccggGGGGCCUGCCGgacGCGGa -3' miRNA: 3'- gCCGCGca-CG----------UCCCGGACGGC---UGCCg -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 148573 | 0.69 | 0.456225 |
Target: 5'- gGGUcagcccCGUGCGGGGCCUGgUGcCGGUc -3' miRNA: 3'- gCCGc-----GCACGUCCCGGACgGCuGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 161024 | 0.7 | 0.446955 |
Target: 5'- aGGCGgcaucgaCGUGCAgGGGCCgGUCGAcgcuaucuauCGGCa -3' miRNA: 3'- gCCGC-------GCACGU-CCCGGaCGGCU----------GCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 124435 | 0.7 | 0.431194 |
Target: 5'- aGGaCGUGcUGCAGcgacucgaaGCCcGCCGACGGCg -3' miRNA: 3'- gCC-GCGC-ACGUCc--------CGGaCGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 77418 | 0.7 | 0.42303 |
Target: 5'- uGGCG-GUGacccGGGCgCUGCUGACGGa -3' miRNA: 3'- gCCGCgCACgu--CCCG-GACGGCUGCCg -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 82678 | 0.7 | 0.42303 |
Target: 5'- uGGUGC--GCAGGGUCgGCC-ACGGCu -3' miRNA: 3'- gCCGCGcaCGUCCCGGaCGGcUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 142651 | 0.7 | 0.414959 |
Target: 5'- cCGGCGgaUGCAGGGCCUGCUcuGCGa- -3' miRNA: 3'- -GCCGCgcACGUCCCGGACGGc-UGCcg -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 92473 | 0.7 | 0.414959 |
Target: 5'- gCGGCGaUGUGCcGGGCCagagGCUGACcGGa -3' miRNA: 3'- -GCCGC-GCACGuCCCGGa---CGGCUG-CCg -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 115992 | 0.7 | 0.414959 |
Target: 5'- aGGCGCucguccgccgacGUGCgccgcgGGGGCagcucuCUGCCGACGGg -3' miRNA: 3'- gCCGCG------------CACG------UCCCG------GACGGCUGCCg -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 136607 | 0.7 | 0.406984 |
Target: 5'- gGGUgGgGUGCGGGGCgCUGguCCGagGCGGCg -3' miRNA: 3'- gCCG-CgCACGUCCCG-GAC--GGC--UGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 96741 | 0.7 | 0.406984 |
Target: 5'- uGGaCGCGgGCgAGGGCgaGCagggCGACGGCg -3' miRNA: 3'- gCC-GCGCaCG-UCCCGgaCG----GCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 80145 | 0.71 | 0.399106 |
Target: 5'- uGGCGCG-GCAGaGGCggCUGaCGACGGg -3' miRNA: 3'- gCCGCGCaCGUC-CCG--GACgGCUGCCg -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 142485 | 0.71 | 0.399106 |
Target: 5'- uGGaCGCGagccaggggGUGGcGGUCUGUCGACGGCu -3' miRNA: 3'- gCC-GCGCa--------CGUC-CCGGACGGCUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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