Results 101 - 120 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15858 | 5' | -64.2 | NC_004065.1 | + | 62471 | 0.71 | 0.383646 |
Target: 5'- cCGGCGaCG-GCAGGaGCg-GCCG-CGGCg -3' miRNA: 3'- -GCCGC-GCaCGUCC-CGgaCGGCuGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 139855 | 0.71 | 0.383646 |
Target: 5'- gGGCGaCG-GCGGaGGCggcggaGCCGGCGGCa -3' miRNA: 3'- gCCGC-GCaCGUC-CCGga----CGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 94717 | 0.71 | 0.383646 |
Target: 5'- gCGGCuCGaGC-GGGCCgaaGUCGGCGGCg -3' miRNA: 3'- -GCCGcGCaCGuCCCGGa--CGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 74143 | 0.71 | 0.376066 |
Target: 5'- aGGCGgGUGCccGGGCCgagaaccccGCaGGCGGCg -3' miRNA: 3'- gCCGCgCACGu-CCCGGa--------CGgCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 159722 | 0.71 | 0.376066 |
Target: 5'- gCGGcCGUGUGgGGGGUgCUGCUGAaGGCc -3' miRNA: 3'- -GCC-GCGCACgUCCCG-GACGGCUgCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 205529 | 0.71 | 0.368588 |
Target: 5'- cCGGCGCu--CAGGGCC-GgCGGCGGUg -3' miRNA: 3'- -GCCGCGcacGUCCCGGaCgGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 104970 | 0.71 | 0.367845 |
Target: 5'- uGGCGCGgaccUGCGaacugacGGGCCUGaaCgGGCGGCu -3' miRNA: 3'- gCCGCGC----ACGU-------CCCGGAC--GgCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 203119 | 0.72 | 0.346772 |
Target: 5'- gGGUccgGCGUGCGGucgagcGGCCUcuggaccgGCCGGCGGUg -3' miRNA: 3'- gCCG---CGCACGUC------CCGGA--------CGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 142390 | 0.72 | 0.342521 |
Target: 5'- aGGCGCGcaguucgcgcucgcGCGGGccaucuuucGCCUGCCGGCGcGCc -3' miRNA: 3'- gCCGCGCa-------------CGUCC---------CGGACGGCUGC-CG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 208005 | 0.72 | 0.33275 |
Target: 5'- gGGC-CGUgGCcGGGUUagUGCCGGCGGCg -3' miRNA: 3'- gCCGcGCA-CGuCCCGG--ACGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 78890 | 0.72 | 0.33275 |
Target: 5'- gGaGCGCGUGCaccaccugcaAGGaGacgacgagaCUGCCGACGGCg -3' miRNA: 3'- gC-CGCGCACG----------UCC-Cg--------GACGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 19758 | 0.72 | 0.325896 |
Target: 5'- gGGgGCGUGCGGGGgUgugGgCGACGGa -3' miRNA: 3'- gCCgCGCACGUCCCgGa--CgGCUGCCg -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 63059 | 0.72 | 0.319148 |
Target: 5'- gCGGCGCaGUcGCAGGagucGCCggucGCCGGCGaGCg -3' miRNA: 3'- -GCCGCG-CA-CGUCC----CGGa---CGGCUGC-CG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 131763 | 0.72 | 0.312506 |
Target: 5'- aGGCGCGcGCccAGGGCCgccgucccgaGCCGucguCGGCa -3' miRNA: 3'- gCCGCGCaCG--UCCCGGa---------CGGCu---GCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 104704 | 0.73 | 0.29321 |
Target: 5'- aGGUGC-UGC-GGGCCUcGCUGACGGa -3' miRNA: 3'- gCCGCGcACGuCCCGGA-CGGCUGCCg -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 175932 | 0.73 | 0.286988 |
Target: 5'- aCGGCgGCGUauaugGCucuGGCuCUGCCGACGGUg -3' miRNA: 3'- -GCCG-CGCA-----CGuc-CCG-GACGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 136647 | 0.73 | 0.28087 |
Target: 5'- gCGGCGUGgauccuggugGCGagcgacgggcGGGUCUgGCCGGCGGCg -3' miRNA: 3'- -GCCGCGCa---------CGU----------CCCGGA-CGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 64202 | 0.73 | 0.274856 |
Target: 5'- aGGCgGCGgGCGGaGGCagUGUCGGCGGCg -3' miRNA: 3'- gCCG-CGCaCGUC-CCGg-ACGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 101434 | 0.74 | 0.25183 |
Target: 5'- uGGCGCGUGCGGaugcGCCUucgccGCCGACGucGCu -3' miRNA: 3'- gCCGCGCACGUCc---CGGA-----CGGCUGC--CG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 128767 | 0.74 | 0.25183 |
Target: 5'- gCGGCaGCGUugaGGGcGCCgucGCCGGCGGCa -3' miRNA: 3'- -GCCG-CGCAcg-UCC-CGGa--CGGCUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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