miRNA display CGI


Results 1 - 20 of 131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15858 5' -64.2 NC_004065.1 + 4380 0.66 0.632381
Target:  5'- aCGGCgGCG-GCGGGaGCCggagUGCUGuucggagcgguggccACGGCg -3'
miRNA:   3'- -GCCG-CGCaCGUCC-CGG----ACGGC---------------UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 5420 0.69 0.482019
Target:  5'- gGGcCGCGUGCGuuGGGaacaaCUccCCGACGGCg -3'
miRNA:   3'- gCC-GCGCACGU--CCCg----GAc-GGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 19679 0.66 0.684893
Target:  5'- uGGCGUaUGCcGGGCCggGUa-ACGGCu -3'
miRNA:   3'- gCCGCGcACGuCCCGGa-CGgcUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 19758 0.72 0.325896
Target:  5'- gGGgGCGUGCGGGGgUgugGgCGACGGa -3'
miRNA:   3'- gCCgCGCACGUCCCgGa--CgGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 19841 0.68 0.53557
Target:  5'- gCGGCG-GUGUcGGGacgaagCUGCCGaAUGGCg -3'
miRNA:   3'- -GCCGCgCACGuCCCg-----GACGGC-UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 21978 0.66 0.684893
Target:  5'- aGGaCG-GUG-AGGGCCgccacggccacGCCGACGGUc -3'
miRNA:   3'- gCC-GCgCACgUCCCGGa----------CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 25017 0.66 0.628617
Target:  5'- gGGCGCG-GCaaGGGGCCgUGucccgacccuCCGACGuGUg -3'
miRNA:   3'- gCCGCGCaCG--UCCCGG-AC----------GGCUGC-CG- -5'
15858 5' -64.2 NC_004065.1 + 29412 0.66 0.628617
Target:  5'- aGGCGCc-GguGGGCCaggGCagggagaaGACGGUg -3'
miRNA:   3'- gCCGCGcaCguCCCGGa--CGg-------CUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 31031 0.69 0.507604
Target:  5'- uCGGcCGCG-GCccugccgagcgccAGGaGUCUGuuGACGGCg -3'
miRNA:   3'- -GCC-GCGCaCG-------------UCC-CGGACggCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 31587 0.66 0.638027
Target:  5'- gCGGCGaCGUcGguGGGCUacacucGCUucgugGACGGCa -3'
miRNA:   3'- -GCCGC-GCA-CguCCCGGa-----CGG-----CUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 31795 0.69 0.464742
Target:  5'- gGGUGCuggGCuacaggccggGGGGCCUGCCGgacGCGGa -3'
miRNA:   3'- gCCGCGca-CG----------UCCCGGACGGC---UGCCg -5'
15858 5' -64.2 NC_004065.1 + 32884 0.66 0.66621
Target:  5'- aGGCGCGccgGCgAGcGUCUGCCGcugGGCa -3'
miRNA:   3'- gCCGCGCa--CG-UCcCGGACGGCug-CCG- -5'
15858 5' -64.2 NC_004065.1 + 36087 0.75 0.208658
Target:  5'- gCGGCGUuaguggaaacaaccGUGgcggcaaCGGGGCCgcUGCCGGCGGCg -3'
miRNA:   3'- -GCCGCG--------------CAC-------GUCCCGG--ACGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 41268 0.66 0.683962
Target:  5'- gCGGuCGCGaucgcccUGguGGGCUUcGCCGcCGuGCg -3'
miRNA:   3'- -GCC-GCGC-------ACguCCCGGA-CGGCuGC-CG- -5'
15858 5' -64.2 NC_004065.1 + 45997 0.77 0.163427
Target:  5'- gGGCGcCGUgGCGgcguugaacucGGGUCUGCCGAUGGCc -3'
miRNA:   3'- gCCGC-GCA-CGU-----------CCCGGACGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 48116 0.66 0.656831
Target:  5'- uGGCgGCGgcGguGGGaCCucgcgcacguUGCCGACGuGCg -3'
miRNA:   3'- gCCG-CGCa-CguCCC-GG----------ACGGCUGC-CG- -5'
15858 5' -64.2 NC_004065.1 + 50851 0.66 0.675567
Target:  5'- aCGcCGgGcGCGGGGCCU-CUGACGGa -3'
miRNA:   3'- -GCcGCgCaCGUCCCGGAcGGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 52485 0.66 0.628617
Target:  5'- gCGGUgGgGUGUuGGGCgCUGuuGGCGcGCg -3'
miRNA:   3'- -GCCG-CgCACGuCCCG-GACggCUGC-CG- -5'
15858 5' -64.2 NC_004065.1 + 56619 0.67 0.600422
Target:  5'- gCGGcCGCGgauguggaUGCGGuGGCagcgGCCG-CGGCa -3'
miRNA:   3'- -GCC-GCGC--------ACGUC-CCGga--CGGCuGCCG- -5'
15858 5' -64.2 NC_004065.1 + 59574 0.69 0.482019
Target:  5'- gCGGCaGCGa--AGGcGCCU-CCGGCGGCg -3'
miRNA:   3'- -GCCG-CGCacgUCC-CGGAcGGCUGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.