miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15858 5' -64.2 NC_004065.1 + 61871 0.76 0.187829
Target:  5'- -cGCGCGa--AGGGCCUGCUGACGGg -3'
miRNA:   3'- gcCGCGCacgUCCCGGACGGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 62471 0.71 0.383646
Target:  5'- cCGGCGaCG-GCAGGaGCg-GCCG-CGGCg -3'
miRNA:   3'- -GCCGC-GCaCGUCC-CGgaCGGCuGCCG- -5'
15858 5' -64.2 NC_004065.1 + 63059 0.72 0.319148
Target:  5'- gCGGCGCaGUcGCAGGagucGCCggucGCCGGCGaGCg -3'
miRNA:   3'- -GCCGCG-CA-CGUCC----CGGa---CGGCUGC-CG- -5'
15858 5' -64.2 NC_004065.1 + 63489 0.68 0.532839
Target:  5'- aGGCGCcgucgcgcagccagGUGCGGauGGCCUcGCCcucGCGGCc -3'
miRNA:   3'- gCCGCG--------------CACGUC--CCGGA-CGGc--UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 64202 0.73 0.274856
Target:  5'- aGGCgGCGgGCGGaGGCagUGUCGGCGGCg -3'
miRNA:   3'- gCCG-CGCaCGUC-CCGg-ACGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 64297 0.67 0.588251
Target:  5'- gCGGCGCGcGUcucggacauccaacAGGGUCUGCUGGacuCGGa -3'
miRNA:   3'- -GCCGCGCaCG--------------UCCCGGACGGCU---GCCg -5'
15858 5' -64.2 NC_004065.1 + 65315 0.69 0.473341
Target:  5'- --cCGCGUGguGGGaCCgGCggCGGCGGCg -3'
miRNA:   3'- gccGCGCACguCCC-GGaCG--GCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 66129 0.68 0.563131
Target:  5'- aGGCGCuGgcgcGCuGGGCC-GCgGAcCGGCg -3'
miRNA:   3'- gCCGCG-Ca---CGuCCCGGaCGgCU-GCCG- -5'
15858 5' -64.2 NC_004065.1 + 67005 0.66 0.66621
Target:  5'- uCGGCGCccGUGUAcGGGCCccgcGCgGGCaGCc -3'
miRNA:   3'- -GCCGCG--CACGU-CCCGGa---CGgCUGcCG- -5'
15858 5' -64.2 NC_004065.1 + 68550 0.66 0.675567
Target:  5'- uGGaCGCGaucucgaaGCuGGGCCUGgCGagcaacGCGGCg -3'
miRNA:   3'- gCC-GCGCa-------CGuCCCGGACgGC------UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 69391 0.66 0.66621
Target:  5'- aCGGCGCuG-GCGGaacagCUGCCGACGGg -3'
miRNA:   3'- -GCCGCG-CaCGUCccg--GACGGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 74143 0.71 0.376066
Target:  5'- aGGCGgGUGCccGGGCCgagaaccccGCaGGCGGCg -3'
miRNA:   3'- gCCGCgCACGu-CCCGGa--------CGgCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 74668 0.78 0.132157
Target:  5'- gCGGCGCGUccgccguagcGCAGGGUCcgauUGCCGAUGGg -3'
miRNA:   3'- -GCCGCGCA----------CGUCCCGG----ACGGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 76737 0.67 0.572405
Target:  5'- uCGGCGgGgac-GGGCgCggcGCCGGCGGCc -3'
miRNA:   3'- -GCCGCgCacguCCCG-Ga--CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 76888 0.66 0.628617
Target:  5'- aGGUGaCGaGCcGGGuCUUGCCGAaGGCg -3'
miRNA:   3'- gCCGC-GCaCGuCCC-GGACGGCUgCCG- -5'
15858 5' -64.2 NC_004065.1 + 77418 0.7 0.42303
Target:  5'- uGGCG-GUGacccGGGCgCUGCUGACGGa -3'
miRNA:   3'- gCCGCgCACgu--CCCG-GACGGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 78033 0.69 0.508497
Target:  5'- uGGCGUGcGCcGGGUCccugaugagGCCGGCGGg -3'
miRNA:   3'- gCCGCGCaCGuCCCGGa--------CGGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 78656 0.68 0.53557
Target:  5'- uCGGcCGCcagcGCAGcGGCCggcGCCG-CGGCg -3'
miRNA:   3'- -GCC-GCGca--CGUC-CCGGa--CGGCuGCCG- -5'
15858 5' -64.2 NC_004065.1 + 78890 0.72 0.33275
Target:  5'- gGaGCGCGUGCaccaccugcaAGGaGacgacgagaCUGCCGACGGCg -3'
miRNA:   3'- gC-CGCGCACG----------UCC-Cg--------GACGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 79283 0.67 0.613567
Target:  5'- aCGGCaucaGCGUggGCGagcugucgacggccuGGGCCUcccaCCGGCGGCg -3'
miRNA:   3'- -GCCG----CGCA--CGU---------------CCCGGAc---GGCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.