miRNA display CGI


Results 41 - 60 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15858 5' -64.2 NC_004065.1 + 80145 0.71 0.399106
Target:  5'- uGGCGCG-GCAGaGGCggCUGaCGACGGg -3'
miRNA:   3'- gCCGCGCaCGUC-CCG--GACgGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 80381 1.11 0.000693
Target:  5'- gCGGCGCGUGCAGGGCCUGCCGACGGCg -3'
miRNA:   3'- -GCCGCGCACGUCCCGGACGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 82522 0.67 0.609809
Target:  5'- uGuuGuCGUGCAGGGCCccguccagggGCUGgACGGCc -3'
miRNA:   3'- gCcgC-GCACGUCCCGGa---------CGGC-UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 82678 0.7 0.42303
Target:  5'- uGGUGC--GCAGGGUCgGCC-ACGGCu -3'
miRNA:   3'- gCCGCGcaCGUCCCGGaCGGcUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 83420 0.68 0.553897
Target:  5'- aCGGCGUc--CAGGGU--GUCGACGGCg -3'
miRNA:   3'- -GCCGCGcacGUCCCGgaCGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 90525 0.68 0.526486
Target:  5'- aGGUG-GUGCGGGGaguacuucucguCCcGcCCGACGGCc -3'
miRNA:   3'- gCCGCgCACGUCCC------------GGaC-GGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 92430 0.66 0.628617
Target:  5'- uCGG-GCGgGCAGGGCgUUGCC-AUGGUu -3'
miRNA:   3'- -GCCgCGCaCGUCCCG-GACGGcUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 92473 0.7 0.414959
Target:  5'- gCGGCGaUGUGCcGGGCCagagGCUGACcGGa -3'
miRNA:   3'- -GCCGC-GCACGuCCCGGa---CGGCUG-CCg -5'
15858 5' -64.2 NC_004065.1 + 94717 0.71 0.383646
Target:  5'- gCGGCuCGaGC-GGGCCgaaGUCGGCGGCg -3'
miRNA:   3'- -GCCGcGCaCGuCCCGGa--CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 94953 0.76 0.187829
Target:  5'- uGGCGC-UGCGGGGCCcGCuCcGCGGCu -3'
miRNA:   3'- gCCGCGcACGUCCCGGaCG-GcUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 96037 0.66 0.684893
Target:  5'- gCGuGCGUGgGCAcGGGCCccggccGCCGAUauaGGCu -3'
miRNA:   3'- -GC-CGCGCaCGU-CCCGGa-----CGGCUG---CCG- -5'
15858 5' -64.2 NC_004065.1 + 96662 0.66 0.628617
Target:  5'- uCGGCGuCG-GC-GGGCUcGcCCGACGGa -3'
miRNA:   3'- -GCCGC-GCaCGuCCCGGaC-GGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 96741 0.7 0.406984
Target:  5'- uGGaCGCGgGCgAGGGCgaGCagggCGACGGCg -3'
miRNA:   3'- gCC-GCGCaCG-UCCCGgaCG----GCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 96851 0.67 0.572405
Target:  5'- aCGGCGCGcugucgccGCGGGcGCCguucugGCCGugGa- -3'
miRNA:   3'- -GCCGCGCa-------CGUCC-CGGa-----CGGCugCcg -5'
15858 5' -64.2 NC_004065.1 + 99128 0.69 0.482019
Target:  5'- aCGGCaac-GCAGGuGCg-GCCGACGGCg -3'
miRNA:   3'- -GCCGcgcaCGUCC-CGgaCGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 101261 0.66 0.638027
Target:  5'- aCGGCGCccucaacgcUGCcGcuGCCgcUGCCGACGGCu -3'
miRNA:   3'- -GCCGCGc--------ACGuCc-CGG--ACGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 101434 0.74 0.25183
Target:  5'- uGGCGCGUGCGGaugcGCCUucgccGCCGACGucGCu -3'
miRNA:   3'- gCCGCGCACGUCc---CGGA-----CGGCUGC--CG- -5'
15858 5' -64.2 NC_004065.1 + 102023 0.68 0.534659
Target:  5'- uGGCGCG-GC-GGGCCaccucggUGaCCcGCGGCg -3'
miRNA:   3'- gCCGCGCaCGuCCCGG-------AC-GGcUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 103755 0.68 0.544709
Target:  5'- -cGCGCG-GCGGGGCCUccgGaCCGuCGcGCa -3'
miRNA:   3'- gcCGCGCaCGUCCCGGA---C-GGCuGC-CG- -5'
15858 5' -64.2 NC_004065.1 + 104704 0.73 0.29321
Target:  5'- aGGUGC-UGC-GGGCCUcGCUGACGGa -3'
miRNA:   3'- gCCGCGcACGuCCCGGA-CGGCUGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.