miRNA display CGI


Results 61 - 80 of 131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15858 5' -64.2 NC_004065.1 + 104834 0.78 0.132157
Target:  5'- uGGCGUcaGCGGGGCCUGCUGGCGuucGCc -3'
miRNA:   3'- gCCGCGcaCGUCCCGGACGGCUGC---CG- -5'
15858 5' -64.2 NC_004065.1 + 104902 0.69 0.490773
Target:  5'- gGGCGaCGgcGCGGuGGU--GCCGGCGGCg -3'
miRNA:   3'- gCCGC-GCa-CGUC-CCGgaCGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 104970 0.71 0.367845
Target:  5'- uGGCGCGgaccUGCGaacugacGGGCCUGaaCgGGCGGCu -3'
miRNA:   3'- gCCGCGC----ACGU-------CCCGGAC--GgCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 105102 0.67 0.571476
Target:  5'- uGGUGCGcGUGGuGGCCgacgacgUGCCGcuggacGCGGCg -3'
miRNA:   3'- gCCGCGCaCGUC-CCGG-------ACGGC------UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 105560 0.67 0.619208
Target:  5'- cCGGCGCagcgGCAcGGCgC-GCCGuCGGCg -3'
miRNA:   3'- -GCCGCGca--CGUcCCG-GaCGGCuGCCG- -5'
15858 5' -64.2 NC_004065.1 + 106161 0.69 0.4996
Target:  5'- gCGGCGCGUGCGgagcgacauGGGCUcGCgGAU-GCa -3'
miRNA:   3'- -GCCGCGCACGU---------CCCGGaCGgCUGcCG- -5'
15858 5' -64.2 NC_004065.1 + 106610 0.68 0.553897
Target:  5'- aCGGUGCGccgacuccauCAGGGcCCUGaCCGAUGGa -3'
miRNA:   3'- -GCCGCGCac--------GUCCC-GGAC-GGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 108666 0.69 0.508497
Target:  5'- uGGCGCccGUGCGGauGGaCCUGCUGuGCGuGCa -3'
miRNA:   3'- gCCGCG--CACGUC--CC-GGACGGC-UGC-CG- -5'
15858 5' -64.2 NC_004065.1 + 108803 0.67 0.609809
Target:  5'- uGGCGUG-GCGGccguucagccgcGGCaacagGCUGACGGCc -3'
miRNA:   3'- gCCGCGCaCGUC------------CCGga---CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 110190 0.66 0.632381
Target:  5'- gCGGcCGCGacgcgccgccGCccgucgagagggaagAGGGCUUcGCCGGCGGCu -3'
miRNA:   3'- -GCC-GCGCa---------CG---------------UCCCGGA-CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 115039 0.67 0.619208
Target:  5'- -cGCGCGgccGcCAGGGCCgaggGCa-ACGGCg -3'
miRNA:   3'- gcCGCGCa--C-GUCCCGGa---CGgcUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 115992 0.7 0.414959
Target:  5'- aGGCGCucguccgccgacGUGCgccgcgGGGGCagcucuCUGCCGACGGg -3'
miRNA:   3'- gCCGCG------------CACG------UCCCG------GACGGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 116316 0.69 0.473341
Target:  5'- uCGGCGuCG-GCGGcGGCagcGgCGACGGCg -3'
miRNA:   3'- -GCCGC-GCaCGUC-CCGga-CgGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 118250 0.68 0.544709
Target:  5'- aCGGaCGCGUGgA--GCUcGCCGGCGGCc -3'
miRNA:   3'- -GCC-GCGCACgUccCGGaCGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 118499 0.67 0.600422
Target:  5'- -uGCuGCG-GUGGGGCCUGUCGcucggguuCGGCa -3'
miRNA:   3'- gcCG-CGCaCGUCCCGGACGGCu-------GCCG- -5'
15858 5' -64.2 NC_004065.1 + 119438 0.66 0.628617
Target:  5'- cCGuGCGCGUGguGGucGCCgagaCCGACgccuGGCg -3'
miRNA:   3'- -GC-CGCGCACguCC--CGGac--GGCUG----CCG- -5'
15858 5' -64.2 NC_004065.1 + 119594 0.68 0.526486
Target:  5'- uGGCcuggaCGUGCAGGac--GCCGGCGGCg -3'
miRNA:   3'- gCCGc----GCACGUCCcggaCGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 120492 0.67 0.619208
Target:  5'- aCGGUGuCGUGCccGGGGuagacggugaCCUGCuCcACGGCg -3'
miRNA:   3'- -GCCGC-GCACG--UCCC----------GGACG-GcUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 120519 0.69 0.498714
Target:  5'- uGGCGCc-GCucgacgaugucgAGGGUCuccggugUGCCGGCGGCg -3'
miRNA:   3'- gCCGCGcaCG------------UCCCGG-------ACGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 120565 0.68 0.544709
Target:  5'- uCGGCGCGagcggGCGGGaCCUccggcGCCGGucuCGGCc -3'
miRNA:   3'- -GCCGCGCa----CGUCCcGGA-----CGGCU---GCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.