miRNA display CGI


Results 81 - 100 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15858 5' -64.2 NC_004065.1 + 121478 0.68 0.553897
Target:  5'- uCGGCGCGUccGC-GGGCgUGaaGGUGGCg -3'
miRNA:   3'- -GCCGCGCA--CGuCCCGgACggCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 124435 0.7 0.431194
Target:  5'- aGGaCGUGcUGCAGcgacucgaaGCCcGCCGACGGCg -3'
miRNA:   3'- gCC-GCGC-ACGUCc--------CGGaCGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 124957 0.69 0.473341
Target:  5'- -uGCGCG-GCAGcGCCUGCacgaagGGCGGCc -3'
miRNA:   3'- gcCGCGCaCGUCcCGGACGg-----CUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 126272 0.66 0.66621
Target:  5'- -aGCGCGUucaGCAGcGCCUGCaCcACGGUg -3'
miRNA:   3'- gcCGCGCA---CGUCcCGGACG-GcUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 126720 0.68 0.563131
Target:  5'- gCGGCGaccGCuGaGCCUGCCGccGCGGCc -3'
miRNA:   3'- -GCCGCgcaCGuCcCGGACGGC--UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 127619 0.67 0.581715
Target:  5'- cCGGCGCucuacGUGCAccgcucGCgCUGCCGcuGCGGCg -3'
miRNA:   3'- -GCCGCG-----CACGUcc----CG-GACGGC--UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 128365 0.67 0.619208
Target:  5'- uGGUGCGcccauCGGGGCU--UCGGCGGCg -3'
miRNA:   3'- gCCGCGCac---GUCCCGGacGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 128397 0.67 0.600422
Target:  5'- cCGGC-UGUG-GGGGCCgagcgGCagCGGCGGCg -3'
miRNA:   3'- -GCCGcGCACgUCCCGGa----CG--GCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 128767 0.74 0.25183
Target:  5'- gCGGCaGCGUugaGGGcGCCgucGCCGGCGGCa -3'
miRNA:   3'- -GCCG-CGCAcg-UCC-CGGa--CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 130128 0.66 0.651194
Target:  5'- uCGGCGCaaGCuGGGCCUGagggugaucaucCCuuuccccccucgcacGGCGGCg -3'
miRNA:   3'- -GCCGCGcaCGuCCCGGAC------------GG---------------CUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 130180 0.68 0.525581
Target:  5'- cCGGCGCcaucugGUGCgacGGGGCCgUGCucaugagCGACGGg -3'
miRNA:   3'- -GCCGCG------CACG---UCCCGG-ACG-------GCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 131763 0.72 0.312506
Target:  5'- aGGCGCGcGCccAGGGCCgccgucccgaGCCGucguCGGCa -3'
miRNA:   3'- gCCGCGCaCG--UCCCGGa---------CGGCu---GCCG- -5'
15858 5' -64.2 NC_004065.1 + 136607 0.7 0.406984
Target:  5'- gGGUgGgGUGCGGGGCgCUGguCCGagGCGGCg -3'
miRNA:   3'- gCCG-CgCACGUCCCG-GAC--GGC--UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 136647 0.73 0.28087
Target:  5'- gCGGCGUGgauccuggugGCGagcgacgggcGGGUCUgGCCGGCGGCg -3'
miRNA:   3'- -GCCGCGCa---------CGU----------CCCGGA-CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 138823 0.66 0.656831
Target:  5'- gCGGCGcCGaUGCcGcGCaC-GCCGACGGCg -3'
miRNA:   3'- -GCCGC-GC-ACGuCcCG-GaCGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 139663 0.77 0.171227
Target:  5'- gCGGCGCGUGCGGcGGCCgcUGCUGucacACGuGCu -3'
miRNA:   3'- -GCCGCGCACGUC-CCGG--ACGGC----UGC-CG- -5'
15858 5' -64.2 NC_004065.1 + 139855 0.71 0.383646
Target:  5'- gGGCGaCG-GCGGaGGCggcggaGCCGGCGGCa -3'
miRNA:   3'- gCCGC-GCaCGUC-CCGga----CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 139896 0.78 0.148781
Target:  5'- aGGUGgccGCGGGGCCUccgGCCGGCGGCg -3'
miRNA:   3'- gCCGCgcaCGUCCCGGA---CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 141607 0.67 0.591056
Target:  5'- aCGGCG---GC-GGGCuccgCUGCCGGCGGUg -3'
miRNA:   3'- -GCCGCgcaCGuCCCG----GACGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 141640 0.68 0.544709
Target:  5'- uCGGCGaCGgaggGCGGuGGCggUGCCG-CGGCc -3'
miRNA:   3'- -GCCGC-GCa---CGUC-CCGg-ACGGCuGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.