miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15858 5' -64.2 NC_004065.1 + 208041 0.67 0.581715
Target:  5'- uCGGCGUGgccGUGGcGGCCcucaccguccUGCCGAcgaCGGCc -3'
miRNA:   3'- -GCCGCGCa--CGUC-CCGG----------ACGGCU---GCCG- -5'
15858 5' -64.2 NC_004065.1 + 208005 0.72 0.33275
Target:  5'- gGGC-CGUgGCcGGGUUagUGCCGGCGGCg -3'
miRNA:   3'- gCCGcGCA-CGuCCCGG--ACGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 206573 0.67 0.59761
Target:  5'- -uGCGUGUGCacgauGGGGCCucggUcaagcggggggaugGCCGACGGUa -3'
miRNA:   3'- gcCGCGCACG-----UCCCGG----A--------------CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 205529 0.71 0.368588
Target:  5'- cCGGCGCu--CAGGGCC-GgCGGCGGUg -3'
miRNA:   3'- -GCCGCGcacGUCCCGGaCgGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 204472 0.66 0.66621
Target:  5'- aGGCGCG----GGGCCgacGCCGACGcCg -3'
miRNA:   3'- gCCGCGCacguCCCGGa--CGGCUGCcG- -5'
15858 5' -64.2 NC_004065.1 + 203119 0.72 0.346772
Target:  5'- gGGUccgGCGUGCGGucgagcGGCCUcuggaccgGCCGGCGGUg -3'
miRNA:   3'- gCCG---CGCACGUC------CCGGA--------CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 202230 0.66 0.675567
Target:  5'- gGGCGaCGUcuGCuGGGGCaggagGCCcuccaGACGGCg -3'
miRNA:   3'- gCCGC-GCA--CG-UCCCGga---CGG-----CUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 200785 0.68 0.53557
Target:  5'- -cGCGCG-GCGGuGGCg-GgCGACGGCg -3'
miRNA:   3'- gcCGCGCaCGUC-CCGgaCgGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 198994 0.85 0.046087
Target:  5'- uGGCGCucgGCAGGGCCgcgGCCGAgGGCa -3'
miRNA:   3'- gCCGCGca-CGUCCCGGa--CGGCUgCCG- -5'
15858 5' -64.2 NC_004065.1 + 198912 0.66 0.675567
Target:  5'- aCGGUGac-GguGGuGCCUGCCcgcuccacccuGGCGGCc -3'
miRNA:   3'- -GCCGCgcaCguCC-CGGACGG-----------CUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 197890 0.66 0.628617
Target:  5'- aGGCGUaGUGCucGGCCaUGCaauCGGCg -3'
miRNA:   3'- gCCGCG-CACGucCCGG-ACGgcuGCCG- -5'
15858 5' -64.2 NC_004065.1 + 195056 0.67 0.600422
Target:  5'- aCGGCGUcucucugaaGUGCAggucGGGCgaGCgCG-CGGCg -3'
miRNA:   3'- -GCCGCG---------CACGU----CCCGgaCG-GCuGCCG- -5'
15858 5' -64.2 NC_004065.1 + 189106 0.67 0.609809
Target:  5'- cCGGUGUcucuGUGCucAGGGCCcggacaaGCCGGCGcGUg -3'
miRNA:   3'- -GCCGCG----CACG--UCCCGGa------CGGCUGC-CG- -5'
15858 5' -64.2 NC_004065.1 + 177488 0.77 0.171227
Target:  5'- gGGCGCacgGCGGGGCC-GCCGGgGGUc -3'
miRNA:   3'- gCCGCGca-CGUCCCGGaCGGCUgCCG- -5'
15858 5' -64.2 NC_004065.1 + 175932 0.73 0.286988
Target:  5'- aCGGCgGCGUauaugGCucuGGCuCUGCCGACGGUg -3'
miRNA:   3'- -GCCG-CGCA-----CGuc-CCG-GACGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 174408 0.66 0.683962
Target:  5'- aGGCguGCGUGUccGGGGUCUgggugaacgcGCCcauccucguguccGACGGCg -3'
miRNA:   3'- gCCG--CGCACG--UCCCGGA----------CGG-------------CUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 168627 0.69 0.508497
Target:  5'- uGGCGCugGUGCcgcGGGCggaGCCGgcGCGGCg -3'
miRNA:   3'- gCCGCG--CACGu--CCCGga-CGGC--UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 168029 0.66 0.641791
Target:  5'- cCGGUucuGUGUucGCGGGGgCUGCUGgugcugcuccugguuGCGGCg -3'
miRNA:   3'- -GCCG---CGCA--CGUCCCgGACGGC---------------UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 167528 0.66 0.675567
Target:  5'- aCGGCuGUGguaGCGGGGUCcuuggUGgUGAUGGCg -3'
miRNA:   3'- -GCCG-CGCa--CGUCCCGG-----ACgGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 166514 0.68 0.525581
Target:  5'- aCGGcCGCGaggGCGaGGCCauccgcaccuggcUGCgCGACGGCg -3'
miRNA:   3'- -GCC-GCGCa--CGUcCCGG-------------ACG-GCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.