miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15858 5' -64.2 NC_004065.1 + 165362 0.66 0.628617
Target:  5'- uCGGUG-GUGCAGaucucGGCCaGCaCGGCGGa -3'
miRNA:   3'- -GCCGCgCACGUC-----CCGGaCG-GCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 161024 0.7 0.446955
Target:  5'- aGGCGgcaucgaCGUGCAgGGGCCgGUCGAcgcuaucuauCGGCa -3'
miRNA:   3'- gCCGC-------GCACGU-CCCGGaCGGCU----------GCCG- -5'
15858 5' -64.2 NC_004065.1 + 159722 0.71 0.376066
Target:  5'- gCGGcCGUGUGgGGGGUgCUGCUGAaGGCc -3'
miRNA:   3'- -GCC-GCGCACgUCCCG-GACGGCUgCCG- -5'
15858 5' -64.2 NC_004065.1 + 153882 0.67 0.600422
Target:  5'- aCGGUG-GUGUucguGGGGaCCcGCUGGCGGUc -3'
miRNA:   3'- -GCCGCgCACG----UCCC-GGaCGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 151359 0.68 0.53557
Target:  5'- gGGCGCc-GCGGcgccGGCCgcugcGCUGGCGGCc -3'
miRNA:   3'- gCCGCGcaCGUC----CCGGa----CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 149923 0.67 0.609809
Target:  5'- gGGCGCGcggcucgGCAggaggcGGGCUUGauccacaGACGGCg -3'
miRNA:   3'- gCCGCGCa------CGU------CCCGGACgg-----CUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 148573 0.69 0.456225
Target:  5'- gGGUcagcccCGUGCGGGGCCUGgUGcCGGUc -3'
miRNA:   3'- gCCGc-----GCACGUCCCGGACgGCuGCCG- -5'
15858 5' -64.2 NC_004065.1 + 146595 0.66 0.647434
Target:  5'- uCGGgGUGgccauCGGGGCC-GUCGGCGGg -3'
miRNA:   3'- -GCCgCGCac---GUCCCGGaCGGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 142651 0.7 0.414959
Target:  5'- cCGGCGgaUGCAGGGCCUGCUcuGCGa- -3'
miRNA:   3'- -GCCGCgcACGUCCCGGACGGc-UGCcg -5'
15858 5' -64.2 NC_004065.1 + 142485 0.71 0.399106
Target:  5'- uGGaCGCGagccaggggGUGGcGGUCUGUCGACGGCu -3'
miRNA:   3'- gCC-GCGCa--------CGUC-CCGGACGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 142390 0.72 0.342521
Target:  5'- aGGCGCGcaguucgcgcucgcGCGGGccaucuuucGCCUGCCGGCGcGCc -3'
miRNA:   3'- gCCGCGCa-------------CGUCC---------CGGACGGCUGC-CG- -5'
15858 5' -64.2 NC_004065.1 + 141640 0.68 0.544709
Target:  5'- uCGGCGaCGgaggGCGGuGGCggUGCCG-CGGCc -3'
miRNA:   3'- -GCCGC-GCa---CGUC-CCGg-ACGGCuGCCG- -5'
15858 5' -64.2 NC_004065.1 + 141607 0.67 0.591056
Target:  5'- aCGGCG---GC-GGGCuccgCUGCCGGCGGUg -3'
miRNA:   3'- -GCCGCgcaCGuCCCG----GACGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 139896 0.78 0.148781
Target:  5'- aGGUGgccGCGGGGCCUccgGCCGGCGGCg -3'
miRNA:   3'- gCCGCgcaCGUCCCGGA---CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 139855 0.71 0.383646
Target:  5'- gGGCGaCG-GCGGaGGCggcggaGCCGGCGGCa -3'
miRNA:   3'- gCCGC-GCaCGUC-CCGga----CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 139663 0.77 0.171227
Target:  5'- gCGGCGCGUGCGGcGGCCgcUGCUGucacACGuGCu -3'
miRNA:   3'- -GCCGCGCACGUC-CCGG--ACGGC----UGC-CG- -5'
15858 5' -64.2 NC_004065.1 + 138823 0.66 0.656831
Target:  5'- gCGGCGcCGaUGCcGcGCaC-GCCGACGGCg -3'
miRNA:   3'- -GCCGC-GC-ACGuCcCG-GaCGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 136647 0.73 0.28087
Target:  5'- gCGGCGUGgauccuggugGCGagcgacgggcGGGUCUgGCCGGCGGCg -3'
miRNA:   3'- -GCCGCGCa---------CGU----------CCCGGA-CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 136607 0.7 0.406984
Target:  5'- gGGUgGgGUGCGGGGCgCUGguCCGagGCGGCg -3'
miRNA:   3'- gCCG-CgCACGUCCCG-GAC--GGC--UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 131763 0.72 0.312506
Target:  5'- aGGCGCGcGCccAGGGCCgccgucccgaGCCGucguCGGCa -3'
miRNA:   3'- gCCGCGCaCG--UCCCGGa---------CGGCu---GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.