miRNA display CGI


Results 41 - 60 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15858 5' -64.2 NC_004065.1 + 130180 0.68 0.525581
Target:  5'- cCGGCGCcaucugGUGCgacGGGGCCgUGCucaugagCGACGGg -3'
miRNA:   3'- -GCCGCG------CACG---UCCCGG-ACG-------GCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 130128 0.66 0.651194
Target:  5'- uCGGCGCaaGCuGGGCCUGagggugaucaucCCuuuccccccucgcacGGCGGCg -3'
miRNA:   3'- -GCCGCGcaCGuCCCGGAC------------GG---------------CUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 128767 0.74 0.25183
Target:  5'- gCGGCaGCGUugaGGGcGCCgucGCCGGCGGCa -3'
miRNA:   3'- -GCCG-CGCAcg-UCC-CGGa--CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 128397 0.67 0.600422
Target:  5'- cCGGC-UGUG-GGGGCCgagcgGCagCGGCGGCg -3'
miRNA:   3'- -GCCGcGCACgUCCCGGa----CG--GCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 128365 0.67 0.619208
Target:  5'- uGGUGCGcccauCGGGGCU--UCGGCGGCg -3'
miRNA:   3'- gCCGCGCac---GUCCCGGacGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 127619 0.67 0.581715
Target:  5'- cCGGCGCucuacGUGCAccgcucGCgCUGCCGcuGCGGCg -3'
miRNA:   3'- -GCCGCG-----CACGUcc----CG-GACGGC--UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 126720 0.68 0.563131
Target:  5'- gCGGCGaccGCuGaGCCUGCCGccGCGGCc -3'
miRNA:   3'- -GCCGCgcaCGuCcCGGACGGC--UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 126272 0.66 0.66621
Target:  5'- -aGCGCGUucaGCAGcGCCUGCaCcACGGUg -3'
miRNA:   3'- gcCGCGCA---CGUCcCGGACG-GcUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 124957 0.69 0.473341
Target:  5'- -uGCGCG-GCAGcGCCUGCacgaagGGCGGCc -3'
miRNA:   3'- gcCGCGCaCGUCcCGGACGg-----CUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 124435 0.7 0.431194
Target:  5'- aGGaCGUGcUGCAGcgacucgaaGCCcGCCGACGGCg -3'
miRNA:   3'- gCC-GCGC-ACGUCc--------CGGaCGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 121478 0.68 0.553897
Target:  5'- uCGGCGCGUccGC-GGGCgUGaaGGUGGCg -3'
miRNA:   3'- -GCCGCGCA--CGuCCCGgACggCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 120565 0.68 0.544709
Target:  5'- uCGGCGCGagcggGCGGGaCCUccggcGCCGGucuCGGCc -3'
miRNA:   3'- -GCCGCGCa----CGUCCcGGA-----CGGCU---GCCG- -5'
15858 5' -64.2 NC_004065.1 + 120519 0.69 0.498714
Target:  5'- uGGCGCc-GCucgacgaugucgAGGGUCuccggugUGCCGGCGGCg -3'
miRNA:   3'- gCCGCGcaCG------------UCCCGG-------ACGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 120492 0.67 0.619208
Target:  5'- aCGGUGuCGUGCccGGGGuagacggugaCCUGCuCcACGGCg -3'
miRNA:   3'- -GCCGC-GCACG--UCCC----------GGACG-GcUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 119594 0.68 0.526486
Target:  5'- uGGCcuggaCGUGCAGGac--GCCGGCGGCg -3'
miRNA:   3'- gCCGc----GCACGUCCcggaCGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 119438 0.66 0.628617
Target:  5'- cCGuGCGCGUGguGGucGCCgagaCCGACgccuGGCg -3'
miRNA:   3'- -GC-CGCGCACguCC--CGGac--GGCUG----CCG- -5'
15858 5' -64.2 NC_004065.1 + 118499 0.67 0.600422
Target:  5'- -uGCuGCG-GUGGGGCCUGUCGcucggguuCGGCa -3'
miRNA:   3'- gcCG-CGCaCGUCCCGGACGGCu-------GCCG- -5'
15858 5' -64.2 NC_004065.1 + 118250 0.68 0.544709
Target:  5'- aCGGaCGCGUGgA--GCUcGCCGGCGGCc -3'
miRNA:   3'- -GCC-GCGCACgUccCGGaCGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 116316 0.69 0.473341
Target:  5'- uCGGCGuCG-GCGGcGGCagcGgCGACGGCg -3'
miRNA:   3'- -GCCGC-GCaCGUC-CCGga-CgGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 115992 0.7 0.414959
Target:  5'- aGGCGCucguccgccgacGUGCgccgcgGGGGCagcucuCUGCCGACGGg -3'
miRNA:   3'- gCCGCG------------CACG------UCCCG------GACGGCUGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.