miRNA display CGI


Results 61 - 80 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15858 5' -64.2 NC_004065.1 + 115039 0.67 0.619208
Target:  5'- -cGCGCGgccGcCAGGGCCgaggGCa-ACGGCg -3'
miRNA:   3'- gcCGCGCa--C-GUCCCGGa---CGgcUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 110190 0.66 0.632381
Target:  5'- gCGGcCGCGacgcgccgccGCccgucgagagggaagAGGGCUUcGCCGGCGGCu -3'
miRNA:   3'- -GCC-GCGCa---------CG---------------UCCCGGA-CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 108803 0.67 0.609809
Target:  5'- uGGCGUG-GCGGccguucagccgcGGCaacagGCUGACGGCc -3'
miRNA:   3'- gCCGCGCaCGUC------------CCGga---CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 108666 0.69 0.508497
Target:  5'- uGGCGCccGUGCGGauGGaCCUGCUGuGCGuGCa -3'
miRNA:   3'- gCCGCG--CACGUC--CC-GGACGGC-UGC-CG- -5'
15858 5' -64.2 NC_004065.1 + 106610 0.68 0.553897
Target:  5'- aCGGUGCGccgacuccauCAGGGcCCUGaCCGAUGGa -3'
miRNA:   3'- -GCCGCGCac--------GUCCC-GGAC-GGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 106161 0.69 0.4996
Target:  5'- gCGGCGCGUGCGgagcgacauGGGCUcGCgGAU-GCa -3'
miRNA:   3'- -GCCGCGCACGU---------CCCGGaCGgCUGcCG- -5'
15858 5' -64.2 NC_004065.1 + 105560 0.67 0.619208
Target:  5'- cCGGCGCagcgGCAcGGCgC-GCCGuCGGCg -3'
miRNA:   3'- -GCCGCGca--CGUcCCG-GaCGGCuGCCG- -5'
15858 5' -64.2 NC_004065.1 + 105102 0.67 0.571476
Target:  5'- uGGUGCGcGUGGuGGCCgacgacgUGCCGcuggacGCGGCg -3'
miRNA:   3'- gCCGCGCaCGUC-CCGG-------ACGGC------UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 104970 0.71 0.367845
Target:  5'- uGGCGCGgaccUGCGaacugacGGGCCUGaaCgGGCGGCu -3'
miRNA:   3'- gCCGCGC----ACGU-------CCCGGAC--GgCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 104902 0.69 0.490773
Target:  5'- gGGCGaCGgcGCGGuGGU--GCCGGCGGCg -3'
miRNA:   3'- gCCGC-GCa-CGUC-CCGgaCGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 104834 0.78 0.132157
Target:  5'- uGGCGUcaGCGGGGCCUGCUGGCGuucGCc -3'
miRNA:   3'- gCCGCGcaCGUCCCGGACGGCUGC---CG- -5'
15858 5' -64.2 NC_004065.1 + 104704 0.73 0.29321
Target:  5'- aGGUGC-UGC-GGGCCUcGCUGACGGa -3'
miRNA:   3'- gCCGCGcACGuCCCGGA-CGGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 103755 0.68 0.544709
Target:  5'- -cGCGCG-GCGGGGCCUccgGaCCGuCGcGCa -3'
miRNA:   3'- gcCGCGCaCGUCCCGGA---C-GGCuGC-CG- -5'
15858 5' -64.2 NC_004065.1 + 102023 0.68 0.534659
Target:  5'- uGGCGCG-GC-GGGCCaccucggUGaCCcGCGGCg -3'
miRNA:   3'- gCCGCGCaCGuCCCGG-------AC-GGcUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 101434 0.74 0.25183
Target:  5'- uGGCGCGUGCGGaugcGCCUucgccGCCGACGucGCu -3'
miRNA:   3'- gCCGCGCACGUCc---CGGA-----CGGCUGC--CG- -5'
15858 5' -64.2 NC_004065.1 + 101261 0.66 0.638027
Target:  5'- aCGGCGCccucaacgcUGCcGcuGCCgcUGCCGACGGCu -3'
miRNA:   3'- -GCCGCGc--------ACGuCc-CGG--ACGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 99128 0.69 0.482019
Target:  5'- aCGGCaac-GCAGGuGCg-GCCGACGGCg -3'
miRNA:   3'- -GCCGcgcaCGUCC-CGgaCGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 96851 0.67 0.572405
Target:  5'- aCGGCGCGcugucgccGCGGGcGCCguucugGCCGugGa- -3'
miRNA:   3'- -GCCGCGCa-------CGUCC-CGGa-----CGGCugCcg -5'
15858 5' -64.2 NC_004065.1 + 96741 0.7 0.406984
Target:  5'- uGGaCGCGgGCgAGGGCgaGCagggCGACGGCg -3'
miRNA:   3'- gCC-GCGCaCG-UCCCGgaCG----GCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 96662 0.66 0.628617
Target:  5'- uCGGCGuCG-GC-GGGCUcGcCCGACGGa -3'
miRNA:   3'- -GCCGC-GCaCGuCCCGGaC-GGCUGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.