miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15858 5' -64.2 NC_004065.1 + 124957 0.69 0.473341
Target:  5'- -uGCGCG-GCAGcGCCUGCacgaagGGCGGCc -3'
miRNA:   3'- gcCGCGCaCGUCcCGGACGg-----CUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 148573 0.69 0.456225
Target:  5'- gGGUcagcccCGUGCGGGGCCUGgUGcCGGUc -3'
miRNA:   3'- gCCGc-----GCACGUCCCGGACgGCuGCCG- -5'
15858 5' -64.2 NC_004065.1 + 142390 0.72 0.342521
Target:  5'- aGGCGCGcaguucgcgcucgcGCGGGccaucuuucGCCUGCCGGCGcGCc -3'
miRNA:   3'- gCCGCGCa-------------CGUCC---------CGGACGGCUGC-CG- -5'
15858 5' -64.2 NC_004065.1 + 78890 0.72 0.33275
Target:  5'- gGaGCGCGUGCaccaccugcaAGGaGacgacgagaCUGCCGACGGCg -3'
miRNA:   3'- gC-CGCGCACG----------UCC-Cg--------GACGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 19758 0.72 0.325896
Target:  5'- gGGgGCGUGCGGGGgUgugGgCGACGGa -3'
miRNA:   3'- gCCgCGCACGUCCCgGa--CgGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 64202 0.73 0.274856
Target:  5'- aGGCgGCGgGCGGaGGCagUGUCGGCGGCg -3'
miRNA:   3'- gCCG-CGCaCGUC-CCGg-ACGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 128767 0.74 0.25183
Target:  5'- gCGGCaGCGUugaGGGcGCCgucGCCGGCGGCa -3'
miRNA:   3'- -GCCG-CGCAcg-UCC-CGGa--CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 36087 0.75 0.208658
Target:  5'- gCGGCGUuaguggaaacaaccGUGgcggcaaCGGGGCCgcUGCCGGCGGCg -3'
miRNA:   3'- -GCCGCG--------------CAC-------GUCCCGG--ACGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 61871 0.76 0.187829
Target:  5'- -cGCGCGa--AGGGCCUGCUGACGGg -3'
miRNA:   3'- gcCGCGCacgUCCCGGACGGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 45997 0.77 0.163427
Target:  5'- gGGCGcCGUgGCGgcguugaacucGGGUCUGCCGAUGGCc -3'
miRNA:   3'- gCCGC-GCA-CGU-----------CCCGGACGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 74143 0.71 0.376066
Target:  5'- aGGCGgGUGCccGGGCCgagaaccccGCaGGCGGCg -3'
miRNA:   3'- gCCGCgCACGu-CCCGGa--------CGgCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 62471 0.71 0.383646
Target:  5'- cCGGCGaCG-GCAGGaGCg-GCCG-CGGCg -3'
miRNA:   3'- -GCCGC-GCaCGUCC-CGgaCGGCuGCCG- -5'
15858 5' -64.2 NC_004065.1 + 161024 0.7 0.446955
Target:  5'- aGGCGgcaucgaCGUGCAgGGGCCgGUCGAcgcuaucuauCGGCa -3'
miRNA:   3'- gCCGC-------GCACGU-CCCGGaCGGCU----------GCCG- -5'
15858 5' -64.2 NC_004065.1 + 124435 0.7 0.431194
Target:  5'- aGGaCGUGcUGCAGcgacucgaaGCCcGCCGACGGCg -3'
miRNA:   3'- gCC-GCGC-ACGUCc--------CGGaCGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 82678 0.7 0.42303
Target:  5'- uGGUGC--GCAGGGUCgGCC-ACGGCu -3'
miRNA:   3'- gCCGCGcaCGUCCCGGaCGGcUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 77418 0.7 0.42303
Target:  5'- uGGCG-GUGacccGGGCgCUGCUGACGGa -3'
miRNA:   3'- gCCGCgCACgu--CCCG-GACGGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 92473 0.7 0.414959
Target:  5'- gCGGCGaUGUGCcGGGCCagagGCUGACcGGa -3'
miRNA:   3'- -GCCGC-GCACGuCCCGGa---CGGCUG-CCg -5'
15858 5' -64.2 NC_004065.1 + 115992 0.7 0.414959
Target:  5'- aGGCGCucguccgccgacGUGCgccgcgGGGGCagcucuCUGCCGACGGg -3'
miRNA:   3'- gCCGCG------------CACG------UCCCG------GACGGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 96741 0.7 0.406984
Target:  5'- uGGaCGCGgGCgAGGGCgaGCagggCGACGGCg -3'
miRNA:   3'- gCC-GCGCaCG-UCCCGgaCG----GCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 80145 0.71 0.399106
Target:  5'- uGGCGCG-GCAGaGGCggCUGaCGACGGg -3'
miRNA:   3'- gCCGCGCaCGUC-CCG--GACgGCUGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.