Results 41 - 60 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15858 | 5' | -64.2 | NC_004065.1 | + | 64202 | 0.73 | 0.274856 |
Target: 5'- aGGCgGCGgGCGGaGGCagUGUCGGCGGCg -3' miRNA: 3'- gCCG-CGCaCGUC-CCGg-ACGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 128767 | 0.74 | 0.25183 |
Target: 5'- gCGGCaGCGUugaGGGcGCCgucGCCGGCGGCa -3' miRNA: 3'- -GCCG-CGCAcg-UCC-CGGa--CGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 36087 | 0.75 | 0.208658 |
Target: 5'- gCGGCGUuaguggaaacaaccGUGgcggcaaCGGGGCCgcUGCCGGCGGCg -3' miRNA: 3'- -GCCGCG--------------CAC-------GUCCCGG--ACGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 61871 | 0.76 | 0.187829 |
Target: 5'- -cGCGCGa--AGGGCCUGCUGACGGg -3' miRNA: 3'- gcCGCGCacgUCCCGGACGGCUGCCg -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 45997 | 0.77 | 0.163427 |
Target: 5'- gGGCGcCGUgGCGgcguugaacucGGGUCUGCCGAUGGCc -3' miRNA: 3'- gCCGC-GCA-CGU-----------CCCGGACGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 92473 | 0.7 | 0.414959 |
Target: 5'- gCGGCGaUGUGCcGGGCCagagGCUGACcGGa -3' miRNA: 3'- -GCCGC-GCACGuCCCGGa---CGGCUG-CCg -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 77418 | 0.7 | 0.42303 |
Target: 5'- uGGCG-GUGacccGGGCgCUGCUGACGGa -3' miRNA: 3'- gCCGCgCACgu--CCCG-GACGGCUGCCg -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 19841 | 0.68 | 0.53557 |
Target: 5'- gCGGCG-GUGUcGGGacgaagCUGCCGaAUGGCg -3' miRNA: 3'- -GCCGCgCACGuCCCg-----GACGGC-UGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 63489 | 0.68 | 0.532839 |
Target: 5'- aGGCGCcgucgcgcagccagGUGCGGauGGCCUcGCCcucGCGGCc -3' miRNA: 3'- gCCGCG--------------CACGUC--CCGGA-CGGc--UGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 90525 | 0.68 | 0.526486 |
Target: 5'- aGGUG-GUGCGGGGaguacuucucguCCcGcCCGACGGCc -3' miRNA: 3'- gCCGCgCACGUCCC------------GGaC-GGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 130180 | 0.68 | 0.525581 |
Target: 5'- cCGGCGCcaucugGUGCgacGGGGCCgUGCucaugagCGACGGg -3' miRNA: 3'- -GCCGCG------CACG---UCCCGG-ACG-------GCUGCCg -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 168627 | 0.69 | 0.508497 |
Target: 5'- uGGCGCugGUGCcgcGGGCggaGCCGgcGCGGCg -3' miRNA: 3'- gCCGCG--CACGu--CCCGga-CGGC--UGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 31031 | 0.69 | 0.507604 |
Target: 5'- uCGGcCGCG-GCccugccgagcgccAGGaGUCUGuuGACGGCg -3' miRNA: 3'- -GCC-GCGCaCG-------------UCC-CGGACggCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 120519 | 0.69 | 0.498714 |
Target: 5'- uGGCGCc-GCucgacgaugucgAGGGUCuccggugUGCCGGCGGCg -3' miRNA: 3'- gCCGCGcaCG------------UCCCGG-------ACGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 99128 | 0.69 | 0.482019 |
Target: 5'- aCGGCaac-GCAGGuGCg-GCCGACGGCg -3' miRNA: 3'- -GCCGcgcaCGUCC-CGgaCGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 124957 | 0.69 | 0.473341 |
Target: 5'- -uGCGCG-GCAGcGCCUGCacgaagGGCGGCc -3' miRNA: 3'- gcCGCGCaCGUCcCGGACGg-----CUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 148573 | 0.69 | 0.456225 |
Target: 5'- gGGUcagcccCGUGCGGGGCCUGgUGcCGGUc -3' miRNA: 3'- gCCGc-----GCACGUCCCGGACgGCuGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 161024 | 0.7 | 0.446955 |
Target: 5'- aGGCGgcaucgaCGUGCAgGGGCCgGUCGAcgcuaucuauCGGCa -3' miRNA: 3'- gCCGC-------GCACGU-CCCGGaCGGCU----------GCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 124435 | 0.7 | 0.431194 |
Target: 5'- aGGaCGUGcUGCAGcgacucgaaGCCcGCCGACGGCg -3' miRNA: 3'- gCC-GCGC-ACGUCc--------CGGaCGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 82678 | 0.7 | 0.42303 |
Target: 5'- uGGUGC--GCAGGGUCgGCC-ACGGCu -3' miRNA: 3'- gCCGCGcaCGUCCCGGaCGGcUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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