miRNA display CGI


Results 61 - 80 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15858 5' -64.2 NC_004065.1 + 161024 0.7 0.446955
Target:  5'- aGGCGgcaucgaCGUGCAgGGGCCgGUCGAcgcuaucuauCGGCa -3'
miRNA:   3'- gCCGC-------GCACGU-CCCGGaCGGCU----------GCCG- -5'
15858 5' -64.2 NC_004065.1 + 148573 0.69 0.456225
Target:  5'- gGGUcagcccCGUGCGGGGCCUGgUGcCGGUc -3'
miRNA:   3'- gCCGc-----GCACGUCCCGGACgGCuGCCG- -5'
15858 5' -64.2 NC_004065.1 + 124957 0.69 0.473341
Target:  5'- -uGCGCG-GCAGcGCCUGCacgaagGGCGGCc -3'
miRNA:   3'- gcCGCGCaCGUCcCGGACGg-----CUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 99128 0.69 0.482019
Target:  5'- aCGGCaac-GCAGGuGCg-GCCGACGGCg -3'
miRNA:   3'- -GCCGcgcaCGUCC-CGgaCGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 120519 0.69 0.498714
Target:  5'- uGGCGCc-GCucgacgaugucgAGGGUCuccggugUGCCGGCGGCg -3'
miRNA:   3'- gCCGCGcaCG------------UCCCGG-------ACGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 175932 0.73 0.286988
Target:  5'- aCGGCgGCGUauaugGCucuGGCuCUGCCGACGGUg -3'
miRNA:   3'- -GCCG-CGCA-----CGuc-CCG-GACGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 104704 0.73 0.29321
Target:  5'- aGGUGC-UGC-GGGCCUcGCUGACGGa -3'
miRNA:   3'- gCCGCGcACGuCCCGGA-CGGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 131763 0.72 0.312506
Target:  5'- aGGCGCGcGCccAGGGCCgccgucccgaGCCGucguCGGCa -3'
miRNA:   3'- gCCGCGCaCG--UCCCGGa---------CGGCu---GCCG- -5'
15858 5' -64.2 NC_004065.1 + 63059 0.72 0.319148
Target:  5'- gCGGCGCaGUcGCAGGagucGCCggucGCCGGCGaGCg -3'
miRNA:   3'- -GCCGCG-CA-CGUCC----CGGa---CGGCUGC-CG- -5'
15858 5' -64.2 NC_004065.1 + 208005 0.72 0.33275
Target:  5'- gGGC-CGUgGCcGGGUUagUGCCGGCGGCg -3'
miRNA:   3'- gCCGcGCA-CGuCCCGG--ACGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 203119 0.72 0.346772
Target:  5'- gGGUccgGCGUGCGGucgagcGGCCUcuggaccgGCCGGCGGUg -3'
miRNA:   3'- gCCG---CGCACGUC------CCGGA--------CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 136647 0.73 0.28087
Target:  5'- gCGGCGUGgauccuggugGCGagcgacgggcGGGUCUgGCCGGCGGCg -3'
miRNA:   3'- -GCCGCGCa---------CGU----------CCCGGA-CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 101434 0.74 0.25183
Target:  5'- uGGCGCGUGCGGaugcGCCUucgccGCCGACGucGCu -3'
miRNA:   3'- gCCGCGCACGUCc---CGGA-----CGGCUGC--CG- -5'
15858 5' -64.2 NC_004065.1 + 94953 0.76 0.187829
Target:  5'- uGGCGC-UGCGGGGCCcGCuCcGCGGCu -3'
miRNA:   3'- gCCGCGcACGUCCCGGaCG-GcUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 139663 0.77 0.171227
Target:  5'- gCGGCGCGUGCGGcGGCCgcUGCUGucacACGuGCu -3'
miRNA:   3'- -GCCGCGCACGUC-CCGG--ACGGC----UGC-CG- -5'
15858 5' -64.2 NC_004065.1 + 177488 0.77 0.171227
Target:  5'- gGGCGCacgGCGGGGCC-GCCGGgGGUc -3'
miRNA:   3'- gCCGCGca-CGUCCCGGaCGGCUgCCG- -5'
15858 5' -64.2 NC_004065.1 + 139896 0.78 0.148781
Target:  5'- aGGUGgccGCGGGGCCUccgGCCGGCGGCg -3'
miRNA:   3'- gCCGCgcaCGUCCCGGA---CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 104834 0.78 0.132157
Target:  5'- uGGCGUcaGCGGGGCCUGCUGGCGuucGCc -3'
miRNA:   3'- gCCGCGcaCGUCCCGGACGGCUGC---CG- -5'
15858 5' -64.2 NC_004065.1 + 198994 0.85 0.046087
Target:  5'- uGGCGCucgGCAGGGCCgcgGCCGAgGGCa -3'
miRNA:   3'- gCCGCGca-CGUCCCGGa--CGGCUgCCG- -5'
15858 5' -64.2 NC_004065.1 + 96037 0.66 0.684893
Target:  5'- gCGuGCGUGgGCAcGGGCCccggccGCCGAUauaGGCu -3'
miRNA:   3'- -GC-CGCGCaCGU-CCCGGa-----CGGCUG---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.