Results 1 - 20 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15858 | 5' | -64.2 | NC_004065.1 | + | 80381 | 1.11 | 0.000693 |
Target: 5'- gCGGCGCGUGCAGGGCCUGCCGACGGCg -3' miRNA: 3'- -GCCGCGCACGUCCCGGACGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 159722 | 0.71 | 0.376066 |
Target: 5'- gCGGcCGUGUGgGGGGUgCUGCUGAaGGCc -3' miRNA: 3'- -GCC-GCGCACgUCCCG-GACGGCUgCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 139855 | 0.71 | 0.383646 |
Target: 5'- gGGCGaCG-GCGGaGGCggcggaGCCGGCGGCa -3' miRNA: 3'- gCCGC-GCaCGUC-CCGga----CGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 96037 | 0.66 | 0.684893 |
Target: 5'- gCGuGCGUGgGCAcGGGCCccggccGCCGAUauaGGCu -3' miRNA: 3'- -GC-CGCGCaCGU-CCCGGa-----CGGCUG---CCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 177488 | 0.77 | 0.171227 |
Target: 5'- gGGCGCacgGCGGGGCC-GCCGGgGGUc -3' miRNA: 3'- gCCGCGca-CGUCCCGGaCGGCUgCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 139663 | 0.77 | 0.171227 |
Target: 5'- gCGGCGCGUGCGGcGGCCgcUGCUGucacACGuGCu -3' miRNA: 3'- -GCCGCGCACGUC-CCGG--ACGGC----UGC-CG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 101434 | 0.74 | 0.25183 |
Target: 5'- uGGCGCGUGCGGaugcGCCUucgccGCCGACGucGCu -3' miRNA: 3'- gCCGCGCACGUCc---CGGA-----CGGCUGC--CG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 136647 | 0.73 | 0.28087 |
Target: 5'- gCGGCGUGgauccuggugGCGagcgacgggcGGGUCUgGCCGGCGGCg -3' miRNA: 3'- -GCCGCGCa---------CGU----------CCCGGA-CGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 131763 | 0.72 | 0.312506 |
Target: 5'- aGGCGCGcGCccAGGGCCgccgucccgaGCCGucguCGGCa -3' miRNA: 3'- gCCGCGCaCG--UCCCGGa---------CGGCu---GCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 205529 | 0.71 | 0.368588 |
Target: 5'- cCGGCGCu--CAGGGCC-GgCGGCGGUg -3' miRNA: 3'- -GCCGCGcacGUCCCGGaCgGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 208005 | 0.72 | 0.33275 |
Target: 5'- gGGC-CGUgGCcGGGUUagUGCCGGCGGCg -3' miRNA: 3'- gCCGcGCA-CGuCCCGG--ACGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 104704 | 0.73 | 0.29321 |
Target: 5'- aGGUGC-UGC-GGGCCUcGCUGACGGa -3' miRNA: 3'- gCCGCGcACGuCCCGGA-CGGCUGCCg -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 198994 | 0.85 | 0.046087 |
Target: 5'- uGGCGCucgGCAGGGCCgcgGCCGAgGGCa -3' miRNA: 3'- gCCGCGca-CGUCCCGGa--CGGCUgCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 203119 | 0.72 | 0.346772 |
Target: 5'- gGGUccgGCGUGCGGucgagcGGCCUcuggaccgGCCGGCGGUg -3' miRNA: 3'- gCCG---CGCACGUC------CCGGA--------CGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 104834 | 0.78 | 0.132157 |
Target: 5'- uGGCGUcaGCGGGGCCUGCUGGCGuucGCc -3' miRNA: 3'- gCCGCGcaCGUCCCGGACGGCUGC---CG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 175932 | 0.73 | 0.286988 |
Target: 5'- aCGGCgGCGUauaugGCucuGGCuCUGCCGACGGUg -3' miRNA: 3'- -GCCG-CGCA-----CGuc-CCG-GACGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 104970 | 0.71 | 0.367845 |
Target: 5'- uGGCGCGgaccUGCGaacugacGGGCCUGaaCgGGCGGCu -3' miRNA: 3'- gCCGCGC----ACGU-------CCCGGAC--GgCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 94717 | 0.71 | 0.383646 |
Target: 5'- gCGGCuCGaGC-GGGCCgaaGUCGGCGGCg -3' miRNA: 3'- -GCCGcGCaCGuCCCGGa--CGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 139896 | 0.78 | 0.148781 |
Target: 5'- aGGUGgccGCGGGGCCUccgGCCGGCGGCg -3' miRNA: 3'- gCCGCgcaCGUCCCGGA---CGGCUGCCG- -5' |
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15858 | 5' | -64.2 | NC_004065.1 | + | 94953 | 0.76 | 0.187829 |
Target: 5'- uGGCGC-UGCGGGGCCcGCuCcGCGGCu -3' miRNA: 3'- gCCGCGcACGUCCCGGaCG-GcUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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