miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15858 5' -64.2 NC_004065.1 + 142651 0.7 0.414959
Target:  5'- cCGGCGgaUGCAGGGCCUGCUcuGCGa- -3'
miRNA:   3'- -GCCGCgcACGUCCCGGACGGc-UGCcg -5'
15858 5' -64.2 NC_004065.1 + 139855 0.71 0.383646
Target:  5'- gGGCGaCG-GCGGaGGCggcggaGCCGGCGGCa -3'
miRNA:   3'- gCCGC-GCaCGUC-CCGga----CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 104704 0.73 0.29321
Target:  5'- aGGUGC-UGC-GGGCCUcGCUGACGGa -3'
miRNA:   3'- gCCGCGcACGuCCCGGA-CGGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 139896 0.78 0.148781
Target:  5'- aGGUGgccGCGGGGCCUccgGCCGGCGGCg -3'
miRNA:   3'- gCCGCgcaCGUCCCGGA---CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 102023 0.68 0.534659
Target:  5'- uGGCGCG-GC-GGGCCaccucggUGaCCcGCGGCg -3'
miRNA:   3'- gCCGCGCaCGuCCCGG-------AC-GGcUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 59574 0.69 0.482019
Target:  5'- gCGGCaGCGa--AGGcGCCU-CCGGCGGCg -3'
miRNA:   3'- -GCCG-CGCacgUCC-CGGAcGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 159722 0.71 0.376066
Target:  5'- gCGGcCGUGUGgGGGGUgCUGCUGAaGGCc -3'
miRNA:   3'- -GCC-GCGCACgUCCCG-GACGGCUgCCG- -5'
15858 5' -64.2 NC_004065.1 + 104834 0.78 0.132157
Target:  5'- uGGCGUcaGCGGGGCCUGCUGGCGuucGCc -3'
miRNA:   3'- gCCGCGcaCGUCCCGGACGGCUGC---CG- -5'
15858 5' -64.2 NC_004065.1 + 5420 0.69 0.482019
Target:  5'- gGGcCGCGUGCGuuGGGaacaaCUccCCGACGGCg -3'
miRNA:   3'- gCC-GCGCACGU--CCCg----GAc-GGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 198994 0.85 0.046087
Target:  5'- uGGCGCucgGCAGGGCCgcgGCCGAgGGCa -3'
miRNA:   3'- gCCGCGca-CGUCCCGGa--CGGCUgCCG- -5'
15858 5' -64.2 NC_004065.1 + 94717 0.71 0.383646
Target:  5'- gCGGCuCGaGC-GGGCCgaaGUCGGCGGCg -3'
miRNA:   3'- -GCCGcGCaCGuCCCGGa--CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 31795 0.69 0.464742
Target:  5'- gGGUGCuggGCuacaggccggGGGGCCUGCCGgacGCGGa -3'
miRNA:   3'- gCCGCGca-CG----------UCCCGGACGGC---UGCCg -5'
15858 5' -64.2 NC_004065.1 + 203119 0.72 0.346772
Target:  5'- gGGUccgGCGUGCGGucgagcGGCCUcuggaccgGCCGGCGGUg -3'
miRNA:   3'- gCCG---CGCACGUC------CCGGA--------CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 131763 0.72 0.312506
Target:  5'- aGGCGCGcGCccAGGGCCgccgucccgaGCCGucguCGGCa -3'
miRNA:   3'- gCCGCGCaCG--UCCCGGa---------CGGCu---GCCG- -5'
15858 5' -64.2 NC_004065.1 + 101434 0.74 0.25183
Target:  5'- uGGCGCGUGCGGaugcGCCUucgccGCCGACGucGCu -3'
miRNA:   3'- gCCGCGCACGUCc---CGGA-----CGGCUGC--CG- -5'
15858 5' -64.2 NC_004065.1 + 177488 0.77 0.171227
Target:  5'- gGGCGCacgGCGGGGCC-GCCGGgGGUc -3'
miRNA:   3'- gCCGCGca-CGUCCCGGaCGGCUgCCG- -5'
15858 5' -64.2 NC_004065.1 + 83420 0.68 0.553897
Target:  5'- aCGGCGUc--CAGGGU--GUCGACGGCg -3'
miRNA:   3'- -GCCGCGcacGUCCCGgaCGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 151359 0.68 0.53557
Target:  5'- gGGCGCc-GCGGcgccGGCCgcugcGCUGGCGGCc -3'
miRNA:   3'- gCCGCGcaCGUC----CCGGa----CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 108666 0.69 0.508497
Target:  5'- uGGCGCccGUGCGGauGGaCCUGCUGuGCGuGCa -3'
miRNA:   3'- gCCGCG--CACGUC--CC-GGACGGC-UGC-CG- -5'
15858 5' -64.2 NC_004065.1 + 104902 0.69 0.490773
Target:  5'- gGGCGaCGgcGCGGuGGU--GCCGGCGGCg -3'
miRNA:   3'- gCCGC-GCa-CGUC-CCGgaCGGCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.