miRNA display CGI


Results 41 - 60 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15858 5' -64.2 NC_004065.1 + 119594 0.68 0.526486
Target:  5'- uGGCcuggaCGUGCAGGac--GCCGGCGGCg -3'
miRNA:   3'- gCCGc----GCACGUCCcggaCGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 159722 0.71 0.376066
Target:  5'- gCGGcCGUGUGgGGGGUgCUGCUGAaGGCc -3'
miRNA:   3'- -GCC-GCGCACgUCCCG-GACGGCUgCCG- -5'
15858 5' -64.2 NC_004065.1 + 104834 0.78 0.132157
Target:  5'- uGGCGUcaGCGGGGCCUGCUGGCGuucGCc -3'
miRNA:   3'- gCCGCGcaCGUCCCGGACGGCUGC---CG- -5'
15858 5' -64.2 NC_004065.1 + 166514 0.68 0.525581
Target:  5'- aCGGcCGCGaggGCGaGGCCauccgcaccuggcUGCgCGACGGCg -3'
miRNA:   3'- -GCC-GCGCa--CGUcCCGG-------------ACG-GCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 198994 0.85 0.046087
Target:  5'- uGGCGCucgGCAGGGCCgcgGCCGAgGGCa -3'
miRNA:   3'- gCCGCGca-CGUCCCGGa--CGGCUgCCG- -5'
15858 5' -64.2 NC_004065.1 + 146595 0.66 0.647434
Target:  5'- uCGGgGUGgccauCGGGGCC-GUCGGCGGg -3'
miRNA:   3'- -GCCgCGCac---GUCCCGGaCGGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 177488 0.77 0.171227
Target:  5'- gGGCGCacgGCGGGGCC-GCCGGgGGUc -3'
miRNA:   3'- gCCGCGca-CGUCCCGGaCGGCUgCCG- -5'
15858 5' -64.2 NC_004065.1 + 4380 0.66 0.632381
Target:  5'- aCGGCgGCG-GCGGGaGCCggagUGCUGuucggagcgguggccACGGCg -3'
miRNA:   3'- -GCCG-CGCaCGUCC-CGG----ACGGC---------------UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 76888 0.66 0.628617
Target:  5'- aGGUGaCGaGCcGGGuCUUGCCGAaGGCg -3'
miRNA:   3'- gCCGC-GCaCGuCCC-GGACGGCUgCCG- -5'
15858 5' -64.2 NC_004065.1 + 108803 0.67 0.609809
Target:  5'- uGGCGUG-GCGGccguucagccgcGGCaacagGCUGACGGCc -3'
miRNA:   3'- gCCGCGCaCGUC------------CCGga---CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 141607 0.67 0.591056
Target:  5'- aCGGCG---GC-GGGCuccgCUGCCGGCGGUg -3'
miRNA:   3'- -GCCGCgcaCGuCCCG----GACGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 83420 0.68 0.553897
Target:  5'- aCGGCGUc--CAGGGU--GUCGACGGCg -3'
miRNA:   3'- -GCCGCGcacGUCCCGgaCGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 151359 0.68 0.53557
Target:  5'- gGGCGCc-GCGGcgccGGCCgcugcGCUGGCGGCc -3'
miRNA:   3'- gCCGCGcaCGUC----CCGGa----CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 106161 0.69 0.4996
Target:  5'- gCGGCGCGUGCGgagcgacauGGGCUcGCgGAU-GCa -3'
miRNA:   3'- -GCCGCGCACGU---------CCCGGaCGgCUGcCG- -5'
15858 5' -64.2 NC_004065.1 + 5420 0.69 0.482019
Target:  5'- gGGcCGCGUGCGuuGGGaacaaCUccCCGACGGCg -3'
miRNA:   3'- gCC-GCGCACGU--CCCg----GAc-GGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 142651 0.7 0.414959
Target:  5'- cCGGCGgaUGCAGGGCCUGCUcuGCGa- -3'
miRNA:   3'- -GCCGCgcACGUCCCGGACGGc-UGCcg -5'
15858 5' -64.2 NC_004065.1 + 139855 0.71 0.383646
Target:  5'- gGGCGaCG-GCGGaGGCggcggaGCCGGCGGCa -3'
miRNA:   3'- gCCGC-GCaCGUC-CCGga----CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 203119 0.72 0.346772
Target:  5'- gGGUccgGCGUGCGGucgagcGGCCUcuggaccgGCCGGCGGUg -3'
miRNA:   3'- gCCG---CGCACGUC------CCGGA--------CGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 131763 0.72 0.312506
Target:  5'- aGGCGCGcGCccAGGGCCgccgucccgaGCCGucguCGGCa -3'
miRNA:   3'- gCCGCGCaCG--UCCCGGa---------CGGCu---GCCG- -5'
15858 5' -64.2 NC_004065.1 + 101434 0.74 0.25183
Target:  5'- uGGCGCGUGCGGaugcGCCUucgccGCCGACGucGCu -3'
miRNA:   3'- gCCGCGCACGUCc---CGGA-----CGGCUGC--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.