miRNA display CGI


Results 61 - 80 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15858 5' -64.2 NC_004065.1 + 5420 0.69 0.482019
Target:  5'- gGGcCGCGUGCGuuGGGaacaaCUccCCGACGGCg -3'
miRNA:   3'- gCC-GCGCACGU--CCCg----GAc-GGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 59574 0.69 0.482019
Target:  5'- gCGGCaGCGa--AGGcGCCU-CCGGCGGCg -3'
miRNA:   3'- -GCCG-CGCacgUCC-CGGAcGGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 78033 0.69 0.508497
Target:  5'- uGGCGUGcGCcGGGUCccugaugagGCCGGCGGg -3'
miRNA:   3'- gCCGCGCaCGuCCCGGa--------CGGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 4380 0.66 0.632381
Target:  5'- aCGGCgGCG-GCGGGaGCCggagUGCUGuucggagcgguggccACGGCg -3'
miRNA:   3'- -GCCG-CGCaCGUCC-CGG----ACGGC---------------UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 82522 0.67 0.609809
Target:  5'- uGuuGuCGUGCAGGGCCccguccagggGCUGgACGGCc -3'
miRNA:   3'- gCcgC-GCACGUCCCGGa---------CGGC-UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 79283 0.67 0.613567
Target:  5'- aCGGCaucaGCGUggGCGagcugucgacggccuGGGCCUcccaCCGGCGGCg -3'
miRNA:   3'- -GCCG----CGCA--CGU---------------CCCGGAc---GGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 67005 0.66 0.66621
Target:  5'- uCGGCGCccGUGUAcGGGCCccgcGCgGGCaGCc -3'
miRNA:   3'- -GCCGCG--CACGU-CCCGGa---CGgCUGcCG- -5'
15858 5' -64.2 NC_004065.1 + 168029 0.66 0.641791
Target:  5'- cCGGUucuGUGUucGCGGGGgCUGCUGgugcugcuccugguuGCGGCg -3'
miRNA:   3'- -GCCG---CGCA--CGUCCCgGACGGC---------------UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 48116 0.66 0.656831
Target:  5'- uGGCgGCGgcGguGGGaCCucgcgcacguUGCCGACGuGCg -3'
miRNA:   3'- gCCG-CGCa-CguCCC-GG----------ACGGCUGC-CG- -5'
15858 5' -64.2 NC_004065.1 + 126272 0.66 0.66621
Target:  5'- -aGCGCGUucaGCAGcGCCUGCaCcACGGUg -3'
miRNA:   3'- gcCGCGCA---CGUCcCGGACG-GcUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 200785 0.68 0.53557
Target:  5'- -cGCGCG-GCGGuGGCg-GgCGACGGCg -3'
miRNA:   3'- gcCGCGCaCGUC-CCGgaCgGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 69391 0.66 0.66621
Target:  5'- aCGGCGCuG-GCGGaacagCUGCCGACGGg -3'
miRNA:   3'- -GCCGCG-CaCGUCccg--GACGGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 19758 0.72 0.325896
Target:  5'- gGGgGCGUGCGGGGgUgugGgCGACGGa -3'
miRNA:   3'- gCCgCGCACGUCCCgGa--CgGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 78656 0.68 0.53557
Target:  5'- uCGGcCGCcagcGCAGcGGCCggcGCCG-CGGCg -3'
miRNA:   3'- -GCC-GCGca--CGUC-CCGGa--CGGCuGCCG- -5'
15858 5' -64.2 NC_004065.1 + 19841 0.68 0.53557
Target:  5'- gCGGCG-GUGUcGGGacgaagCUGCCGaAUGGCg -3'
miRNA:   3'- -GCCGCgCACGuCCCg-----GACGGC-UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 63489 0.68 0.532839
Target:  5'- aGGCGCcgucgcgcagccagGUGCGGauGGCCUcGCCcucGCGGCc -3'
miRNA:   3'- gCCGCG--------------CACGUC--CCGGA-CGGc--UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 68550 0.66 0.675567
Target:  5'- uGGaCGCGaucucgaaGCuGGGCCUGgCGagcaacGCGGCg -3'
miRNA:   3'- gCC-GCGCa-------CGuCCCGGACgGC------UGCCG- -5'
15858 5' -64.2 NC_004065.1 + 167528 0.66 0.675567
Target:  5'- aCGGCuGUGguaGCGGGGUCcuuggUGgUGAUGGCg -3'
miRNA:   3'- -GCCG-CGCa--CGUCCCGG-----ACgGCUGCCG- -5'
15858 5' -64.2 NC_004065.1 + 115992 0.7 0.414959
Target:  5'- aGGCGCucguccgccgacGUGCgccgcgGGGGCagcucuCUGCCGACGGg -3'
miRNA:   3'- gCCGCG------------CACG------UCCCG------GACGGCUGCCg -5'
15858 5' -64.2 NC_004065.1 + 92473 0.7 0.414959
Target:  5'- gCGGCGaUGUGCcGGGCCagagGCUGACcGGa -3'
miRNA:   3'- -GCCGC-GCACGuCCCGGa---CGGCUG-CCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.